| Chain sequence(s) |
A: FFGHKFG
C: FFGHKFG B: FFGHKFG E: FFGHKFG D: FFGHKFG G: FFGHKFG F: FFGHKFG I: FFGHKFG H: FFGHKFG K: FFGHKFG J: FFGHKFG L: FFGHKFG input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:55)
[INFO] Main: Simulation completed successfully. (00:01:57)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.5374 | |
| 2 | F | A | 2.8012 | |
| 3 | G | A | 0.9118 | |
| 4 | H | A | -0.3281 | |
| 5 | K | A | -1.1171 | |
| 6 | F | A | 0.5350 | |
| 7 | G | A | -0.0636 | |
| 1 | F | B | 3.0104 | |
| 2 | F | B | 1.3485 | |
| 3 | G | B | 0.1597 | |
| 4 | H | B | -1.0310 | |
| 5 | K | B | -1.2674 | |
| 6 | F | B | 0.6861 | |
| 7 | G | B | -0.1453 | |
| 1 | F | C | 3.1728 | |
| 2 | F | C | 0.0000 | |
| 3 | G | C | -0.1784 | |
| 4 | H | C | -0.8780 | |
| 5 | K | C | -1.6380 | |
| 6 | F | C | 0.4626 | |
| 7 | G | C | -0.0474 | |
| 1 | F | D | 3.4206 | |
| 2 | F | D | 1.5856 | |
| 3 | G | D | -0.3960 | |
| 4 | H | D | -1.4581 | |
| 5 | K | D | -1.7871 | |
| 6 | F | D | 0.2470 | |
| 7 | G | D | -0.1871 | |
| 1 | F | E | 0.0000 | |
| 2 | F | E | 0.0000 | |
| 3 | G | E | -0.1814 | |
| 4 | H | E | -0.6444 | |
| 5 | K | E | -1.5765 | |
| 6 | F | E | 0.6497 | |
| 7 | G | E | -0.0098 | |
| 1 | F | F | 3.7243 | |
| 2 | F | F | 1.9722 | |
| 3 | G | F | 0.1388 | |
| 4 | H | F | -0.4684 | |
| 5 | K | F | -1.2093 | |
| 6 | F | F | 0.9761 | |
| 7 | G | F | -0.0177 | |
| 1 | F | G | 3.2205 | |
| 2 | F | G | 0.0000 | |
| 3 | G | G | 0.1178 | |
| 4 | H | G | -0.3228 | |
| 5 | K | G | -1.2672 | |
| 6 | F | G | 1.0000 | |
| 7 | G | G | -0.0435 | |
| 1 | F | H | 2.8403 | |
| 2 | F | H | 1.5217 | |
| 3 | G | H | 0.0453 | |
| 4 | H | H | -0.4668 | |
| 5 | K | H | -1.0477 | |
| 6 | F | H | 1.1653 | |
| 7 | G | H | 0.1563 | |
| 1 | F | I | 0.0000 | |
| 2 | F | I | 1.0255 | |
| 3 | G | I | -0.1973 | |
| 4 | H | I | -1.1451 | |
| 5 | K | I | -1.6101 | |
| 6 | F | I | 0.5298 | |
| 7 | G | I | -0.1011 | |
| 1 | F | J | 2.8236 | |
| 2 | F | J | 1.0819 | |
| 3 | G | J | -0.3848 | |
| 4 | H | J | 0.0000 | |
| 5 | K | J | -1.6112 | |
| 6 | F | J | 0.3668 | |
| 7 | G | J | -0.2724 | |
| 1 | F | K | 2.4884 | |
| 2 | F | K | 1.6087 | |
| 3 | G | K | -0.1718 | |
| 4 | H | K | -1.2142 | |
| 5 | K | K | -2.0634 | |
| 6 | F | K | -0.8178 | |
| 7 | G | K | -0.8442 | |
| 1 | F | L | 3.0050 | |
| 2 | F | L | 0.0000 | |
| 3 | G | L | 0.1155 | |
| 4 | H | L | -0.5408 | |
| 5 | K | L | -1.3722 | |
| 6 | F | L | 0.8577 | |
| 7 | G | L | -0.0447 |