Project name: e56cd49dc77f5ad [mutate: VK24H]

Status: done

Started: 2026-02-24 21:05:10
Settings
Chain sequence(s) H: EVQLVESGGGEVQPGGSLKLSCVASGTDFSINFVRWYRQRPGKQREWVAGFTANGDTNYPDSMKGRFTISRDNAKNTVYLQINSLKSEDTAVYYCYMLDNWGQGTQVTVSS
input PDB
Selected Chain(s) H
Distance of aggregation 5 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VK24H
Energy difference between WT (input) and mutated protein (by FoldX) -0.204072 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:00:25)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:46)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:10)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:11)
Show buried residues

Minimal score value
-2.0217
Maximal score value
1.0028
Average score
-0.4289
Total score value
-47.6102

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.7803
2 V H -0.3239
3 Q H -1.1589
4 L H 0.0000
5 V H 1.0028
6 E H -0.0718
7 S H -0.3190
8 G H -0.4544
9 G H -0.3622
11 G H -0.6555
12 E H -1.8371
13 V H -0.3376
14 Q H -1.1833
15 P H -0.6306
16 G H -0.5383
17 G H -0.3072
18 S H -0.2618
19 L H 0.0503
20 K H -1.3380
21 L H 0.0000
22 S H 0.0144
23 C H 0.0000
24 K H -0.9203 mutated: VK24H
25 A H 0.0000
26 S H -0.1226
27 G H -0.4780
28 T H -0.4259
29 D H -1.7941
30 F H 0.0000
35 S H -0.0805
36 I H 0.4519
37 N H -1.0595
38 F H 0.1724
39 V H 0.0000
40 R H -0.2103
41 W H 0.0000
42 Y H 0.2276
43 R H 0.0000
44 Q H -0.5666
45 R H -0.5770
46 P H -0.4204
47 G H -0.8110
48 K H -1.9995
49 Q H -1.6292
50 R H -1.0045
51 E H -0.3449
52 W H 0.2932
53 V H 0.0000
54 A H 0.0000
55 G H 0.0000
56 F H 0.2190
57 T H 0.0891
58 A H -0.3360
59 N H -1.3143
63 G H -0.8088
64 D H -1.8420
65 T H -0.4580
66 N H -0.7246
67 Y H 0.0597
68 P H -0.3606
69 D H -2.0217
70 S H -0.5291
71 M H 0.0000
72 K H -1.9120
74 G H -0.8394
75 R H -0.6086
76 F H 0.0000
77 T H -0.0258
78 I H 0.0000
79 S H -0.1630
80 R H -0.2846
81 D H -0.6185
82 N H -1.3558
83 A H -0.4684
84 K H -1.7297
85 N H -0.6960
86 T H -0.2075
87 V H 0.0000
88 Y H 0.3714
89 L H 0.0000
90 Q H -0.6966
91 I H 0.0000
92 N H -0.6658
93 S H -0.3350
94 L H 0.0000
95 K H -1.5530
96 S H -0.6617
97 E H -1.8319
98 D H 0.0000
99 T H -0.0134
100 A H 0.0000
101 V H 0.4700
102 Y H 0.0000
103 Y H 0.1259
104 C H 0.0000
105 Y H 0.2001
106 M H 0.0000
107 L H 0.6206
116 D H -1.6902
117 N H -0.6333
118 W H 0.3188
119 G H 0.0000
120 Q H -1.2237
121 G H -0.3404
122 T H -0.1544
123 Q H -0.5873
124 V H 0.0000
125 T H -0.2436
126 V H 0.0000
127 S H -0.1290
128 S H -0.2295
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018