| Chain sequence(s) |
A: QLQLVESGGGLVQAGGSMRLSCAASISFSSFPMGWHRQAPGKQRELVAKTGIGGTAYDDSVKGRGTISRDNTKNTVYLQMNSLKVEDTAVYYCWGWRMNDYWGQGTQVYVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:18)
[INFO] Main: Simulation completed successfully. (00:01:18)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2912 | |
| 2 | L | A | -0.8870 | |
| 3 | Q | A | -1.0807 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.4110 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.7061 | |
| 8 | G | A | -1.2358 | |
| 9 | G | A | -0.7307 | |
| 10 | G | A | 0.4289 | |
| 11 | L | A | 1.5555 | |
| 12 | V | A | 0.5615 | |
| 13 | Q | A | -0.8346 | |
| 14 | A | A | -1.0620 | |
| 15 | G | A | -1.2779 | |
| 16 | G | A | -1.1896 | |
| 17 | S | A | -1.5214 | |
| 18 | M | A | 0.0000 | |
| 19 | R | A | -2.3090 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.5745 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.2517 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.4415 | |
| 26 | I | A | 0.1304 | |
| 27 | S | A | -0.3070 | |
| 28 | F | A | 0.0000 | |
| 29 | S | A | -0.2317 | |
| 30 | S | A | -0.1827 | |
| 31 | F | A | 0.0000 | |
| 32 | P | A | -0.1291 | |
| 33 | M | A | 0.0000 | |
| 34 | G | A | 0.0000 | |
| 35 | W | A | 0.0000 | |
| 36 | H | A | -0.8609 | |
| 37 | R | A | -1.5023 | |
| 38 | Q | A | -2.1175 | |
| 39 | A | A | -2.0069 | |
| 40 | P | A | -1.5193 | |
| 41 | G | A | -1.8117 | |
| 42 | K | A | -3.0996 | |
| 43 | Q | A | -3.0321 | |
| 44 | R | A | -2.5497 | |
| 45 | E | A | -2.3386 | |
| 46 | L | A | -0.9251 | |
| 47 | V | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | K | A | -0.5883 | |
| 50 | T | A | 0.0000 | |
| 51 | G | A | 0.3954 | |
| 52 | I | A | 1.5394 | |
| 53 | G | A | 0.2351 | |
| 54 | G | A | -0.1273 | |
| 55 | T | A | -0.1642 | |
| 56 | A | A | -0.6228 | |
| 57 | Y | A | -1.0165 | |
| 58 | D | A | -1.9276 | |
| 59 | D | A | -2.6429 | |
| 60 | S | A | -1.9586 | |
| 61 | V | A | 0.0000 | |
| 62 | K | A | -2.7394 | |
| 63 | G | A | -1.8634 | |
| 64 | R | A | -1.4809 | |
| 65 | G | A | -1.4106 | |
| 66 | T | A | -0.9269 | |
| 67 | I | A | 0.0000 | |
| 68 | S | A | -0.6256 | |
| 69 | R | A | -1.2515 | |
| 70 | D | A | -1.5348 | |
| 71 | N | A | -1.6586 | |
| 72 | T | A | -1.4779 | |
| 73 | K | A | -2.1909 | |
| 74 | N | A | -1.4828 | |
| 75 | T | A | -0.9620 | |
| 76 | V | A | 0.0000 | |
| 77 | Y | A | -0.7061 | |
| 78 | L | A | 0.0000 | |
| 79 | Q | A | -1.3696 | |
| 80 | M | A | 0.0000 | |
| 81 | N | A | -1.7686 | |
| 82 | S | A | -1.4546 | |
| 83 | L | A | 0.0000 | |
| 84 | K | A | -1.7905 | |
| 85 | V | A | -0.5315 | |
| 86 | E | A | -1.6786 | |
| 87 | D | A | 0.0000 | |
| 88 | T | A | -0.1205 | |
| 89 | A | A | 0.0000 | |
| 90 | V | A | -0.5114 | |
| 91 | Y | A | 0.0000 | |
| 92 | Y | A | -0.3436 | |
| 93 | C | A | 0.0000 | |
| 94 | W | A | 0.1778 | |
| 95 | G | A | 0.0000 | |
| 96 | W | A | -0.6872 | |
| 97 | R | A | -1.6006 | |
| 98 | M | A | -0.4970 | |
| 99 | N | A | -1.7142 | |
| 100 | D | A | -1.7597 | |
| 101 | Y | A | -0.7370 | |
| 102 | W | A | -0.0197 | |
| 103 | G | A | -0.2014 | |
| 104 | Q | A | -1.0903 | |
| 105 | G | A | -0.6741 | |
| 106 | T | A | -0.7703 | |
| 107 | Q | A | -0.9234 | |
| 108 | V | A | 0.0000 | |
| 109 | Y | A | 1.2672 | |
| 110 | V | A | 0.0000 | |
| 111 | S | A | -0.0178 | |
| 112 | S | A | -0.3971 |