| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVWKEWMHWYRQAPGKEREWVAAIDSTGHKTAYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGYVWAAYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:36)
[INFO] Main: Simulation completed successfully. (00:01:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4270 | |
| 2 | V | A | -0.6965 | |
| 3 | Q | A | -0.8913 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2093 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5478 | |
| 8 | G | A | -1.0398 | |
| 9 | G | A | -0.8465 | |
| 10 | G | A | -0.0455 | |
| 11 | L | A | 1.0091 | |
| 12 | V | A | -0.0083 | |
| 13 | Q | A | -1.2277 | |
| 14 | A | A | -1.3967 | |
| 15 | G | A | -1.3171 | |
| 16 | G | A | -0.8623 | |
| 17 | S | A | -1.2052 | |
| 18 | L | A | -0.9196 | |
| 19 | R | A | -2.1363 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3330 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.0542 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.6633 | |
| 26 | G | A | -0.7859 | |
| 27 | F | A | 0.0908 | |
| 28 | P | A | -0.0752 | |
| 29 | V | A | 0.0000 | |
| 30 | W | A | -0.4981 | |
| 31 | K | A | -1.3187 | |
| 32 | E | A | -0.6535 | |
| 33 | W | A | -0.1209 | |
| 34 | M | A | 0.0000 | |
| 35 | H | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.8928 | |
| 38 | R | A | -1.7659 | |
| 39 | Q | A | -2.5025 | |
| 40 | A | A | -2.2603 | |
| 41 | P | A | -1.4628 | |
| 42 | G | A | -1.9700 | |
| 43 | K | A | -3.5579 | |
| 44 | E | A | -3.9106 | |
| 45 | R | A | -3.4471 | |
| 46 | E | A | -3.0602 | |
| 47 | W | A | -1.2615 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | D | A | 0.0000 | |
| 53 | S | A | -0.9429 | |
| 54 | T | A | -1.1154 | |
| 55 | G | A | -1.2993 | |
| 56 | H | A | -1.9860 | |
| 57 | K | A | -2.2198 | |
| 58 | T | A | -1.0528 | |
| 59 | A | A | -0.6980 | |
| 60 | Y | A | -0.8574 | |
| 61 | A | A | -1.5140 | |
| 62 | D | A | -2.4556 | |
| 63 | S | A | -1.8139 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.6455 | |
| 66 | G | A | -1.8073 | |
| 67 | R | A | -1.5209 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.8722 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.7850 | |
| 72 | R | A | -1.0608 | |
| 73 | D | A | -1.5566 | |
| 74 | N | A | -1.6161 | |
| 75 | A | A | -1.2571 | |
| 76 | K | A | -2.1464 | |
| 77 | N | A | -1.2654 | |
| 78 | T | A | -0.7894 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6558 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2452 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.4235 | |
| 85 | S | A | -1.2055 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.2957 | |
| 88 | P | A | -1.9077 | |
| 89 | E | A | -2.3452 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9923 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7615 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.3657 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -0.2914 | |
| 100 | D | A | -0.0678 | |
| 101 | Y | A | 1.1736 | |
| 102 | G | A | 1.1784 | |
| 103 | Y | A | 2.3485 | |
| 104 | V | A | 2.8673 | |
| 105 | W | A | 2.3188 | |
| 106 | A | A | 1.3622 | |
| 107 | A | A | 0.9586 | |
| 108 | Y | A | 0.6929 | |
| 109 | D | A | -0.6522 | |
| 110 | Y | A | -0.2636 | |
| 111 | W | A | 0.0865 | |
| 112 | G | A | 0.0041 | |
| 113 | Q | A | -0.9206 | |
| 114 | G | A | -0.5228 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2298 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3182 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7484 |