Project name: query_structure

Status: done

Started: 2026-03-17 00:48:09
Settings
Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVWKEWMHWYRQAPGKEREWVAAIDSTGHKTAYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGYVWAAYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:36)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:36)
Show buried residues

Minimal score value
-3.9106
Maximal score value
2.8673
Average score
-0.6779
Total score value
-81.3526

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4270
2 V A -0.6965
3 Q A -0.8913
4 L A 0.0000
5 V A 1.2093
6 E A 0.0000
7 S A -0.5478
8 G A -1.0398
9 G A -0.8465
10 G A -0.0455
11 L A 1.0091
12 V A -0.0083
13 Q A -1.2277
14 A A -1.3967
15 G A -1.3171
16 G A -0.8623
17 S A -1.2052
18 L A -0.9196
19 R A -2.1363
20 L A 0.0000
21 S A -0.3330
22 C A 0.0000
23 A A -0.0542
24 A A 0.0000
25 S A -0.6633
26 G A -0.7859
27 F A 0.0908
28 P A -0.0752
29 V A 0.0000
30 W A -0.4981
31 K A -1.3187
32 E A -0.6535
33 W A -0.1209
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 Y A -0.8928
38 R A -1.7659
39 Q A -2.5025
40 A A -2.2603
41 P A -1.4628
42 G A -1.9700
43 K A -3.5579
44 E A -3.9106
45 R A -3.4471
46 E A -3.0602
47 W A -1.2615
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 D A 0.0000
53 S A -0.9429
54 T A -1.1154
55 G A -1.2993
56 H A -1.9860
57 K A -2.2198
58 T A -1.0528
59 A A -0.6980
60 Y A -0.8574
61 A A -1.5140
62 D A -2.4556
63 S A -1.8139
64 V A 0.0000
65 K A -2.6455
66 G A -1.8073
67 R A -1.5209
68 F A 0.0000
69 T A -0.8722
70 I A 0.0000
71 S A -0.7850
72 R A -1.0608
73 D A -1.5566
74 N A -1.6161
75 A A -1.2571
76 K A -2.1464
77 N A -1.2654
78 T A -0.7894
79 V A 0.0000
80 Y A -0.6558
81 L A 0.0000
82 Q A -1.2452
83 M A 0.0000
84 N A -1.4235
85 S A -1.2055
86 L A 0.0000
87 K A -2.2957
88 P A -1.9077
89 E A -2.3452
90 D A 0.0000
91 T A -0.9923
92 A A 0.0000
93 V A -0.7615
94 Y A 0.0000
95 Y A -0.3657
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -0.2914
100 D A -0.0678
101 Y A 1.1736
102 G A 1.1784
103 Y A 2.3485
104 V A 2.8673
105 W A 2.3188
106 A A 1.3622
107 A A 0.9586
108 Y A 0.6929
109 D A -0.6522
110 Y A -0.2636
111 W A 0.0865
112 G A 0.0041
113 Q A -0.9206
114 G A -0.5228
115 T A 0.0000
116 Q A -1.2298
117 V A 0.0000
118 T A -0.3182
119 V A 0.0000
120 S A -0.7484
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Laboratory of Theory of Biopolymers 2018