Project name: c09f99b685fa557

Status: done

Started: 2025-08-13 07:49:51
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYYMHWVRQAPGQGLEWMGEISPFGGRTNYNEKFKSRVTMTRDTSTSTVYMELSSLRSEDTAVYYCARERPLYASDLWGQGTTVTVSSATKGPSVFPLAPSSTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSNFGTQTYTCNVDHKPSNTKVDKTVER
L: IQMTQSPSSLSASVGDRVTITCRASQGISSALAWYQQKPGKAPKLLIYSASYRYTGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQRYSLWRTFGQGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGES
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:04)
Show buried residues

Minimal score value
-3.5885
Maximal score value
1.8528
Average score
-0.607
Total score value
-257.3796

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.0121
2 V H -0.0293
3 Q H -0.6776
4 L H 0.0000
5 V H 0.1098
6 Q H 0.0000
7 S H -0.6373
8 G H -0.8748
9 A H -0.7515
10 E H -1.1189
11 V H -0.7586
12 K H -1.5929
13 K H -2.3790
14 P H -1.8617
15 G H -1.5062
16 A H -1.1671
17 S H -1.1075
18 V H 0.0000
19 K H -1.7599
20 V H 0.0000
21 S H -0.6487
22 C H 0.0000
23 K H -1.1283
24 A H 0.0000
25 S H -0.5091
26 G H -0.4706
27 Y H -0.0347
28 T H 0.0731
29 F H -0.0100
30 T H 0.3992
31 S H 0.3308
32 Y H 0.6438
33 Y H 0.9467
34 M H 0.0000
35 H H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.6088
40 A H -1.0583
41 P H -0.9832
42 G H -1.2158
43 Q H -1.8131
44 G H -1.2402
45 L H 0.0000
46 E H -0.8228
47 W H 0.0000
48 M H 0.0000
49 G H 0.0000
50 E H -0.2342
51 I H 0.0000
52 S H 0.0000
52A P H 0.5463
53 F H 1.3710
54 G H -0.2491
55 G H -0.8147
56 R H -1.8580
57 T H -1.1872
58 N H -1.0169
59 Y H -1.1801
60 N H -1.7426
61 E H -3.0760
62 K H -2.5806
63 F H 0.0000
64 K H -2.9069
65 S H -1.6930
66 R H -1.3975
67 V H 0.0000
68 T H -0.8540
69 M H 0.0000
70 T H -0.9366
71 R H -1.3494
72 D H -1.1781
73 T H -0.6802
74 S H -0.5500
75 T H -0.6648
76 S H -0.8005
77 T H 0.0000
78 V H 0.0000
79 Y H -0.7079
80 M H 0.0000
81 E H -1.3605
82 L H 0.0000
82A S H -0.9349
82B S H -1.0583
82C L H 0.0000
83 R H -2.4258
84 S H -1.9765
85 E H -2.3451
86 D H 0.0000
87 T H -0.8710
88 A H 0.0000
89 V H 0.1226
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 R H 0.0000
95 E H 0.0000
96 R H 0.1666
97 P H 0.3103
98 L H 1.1152
99 Y H 0.8216
100 A H 0.0000
100A S H 0.0000
101 D H -0.2082
102 L H -0.2080
103 W H -0.3648
104 G H 0.0000
105 Q H -1.4020
106 G H -0.7391
107 T H 0.0000
108 T H -0.3003
109 V H 0.0000
110 T H 0.0000
111 V H 0.0000
112 S H -1.0898
113 S H -0.8733
114 A H -0.5811
120 T H -1.1565
121 K H -1.9815
122 G H -1.7080
123 P H 0.0000
124 S H -0.7167
125 V H 0.0000
126 F H -0.4633
127 P H -0.9169
128 L H 0.0000
129 A H -1.0235
130 P H -1.1027
131 S H -1.2233
132 S H -0.8557
139 T H -0.2092
140 A H -0.1825
141 A H 0.0000
142 L H 0.0000
143 G H 0.0000
144 C H 0.0000
145 L H 0.0000
146 V H 0.0000
147 K H -0.2525
148 D H -0.5333
149 Y H 0.0000
150 F H 0.0000
151 P H 0.0000
152 E H -0.6095
153 P H -0.6369
154 V H 0.0000
155 T H -0.3479
156 V H -0.4589
157 S H -0.3042
158 W H 0.0000
159 N H -0.8177
160 S H -0.7549
161 G H -0.5115
162 A H -0.2323
163 L H 0.0153
164 T H -0.1455
165 S H -0.1890
166 G H -0.2157
167 V H 0.1800
168 H H -0.2079
169 T H -0.0703
170 F H 0.0000
171 P H -0.2811
172 A H 0.2250
173 V H 0.6522
174 L H 1.4691
175 Q H 0.4136
176 S H -0.0666
177 S H -0.1721
178 G H 0.1363
179 L H 0.1220
180 Y H 0.4223
181 S H 0.0000
182 L H 0.0000
183 S H 0.0000
184 S H 0.0000
185 V H 0.0000
186 V H 0.0000
187 T H -0.0725
188 V H -0.0300
189 P H -0.3190
190 S H -0.3431
191 S H -0.4334
192 N H -0.6275
193 F H -0.3786
194 G H -0.8074
195 T H -0.6611
196 Q H -0.9835
197 T H -1.2875
198 Y H 0.0000
199 T H -0.9808
200 C H 0.0000
201 N H -1.4008
202 V H 0.0000
203 D H -1.7329
204 H H 0.0000
205 K H -2.2422
206 P H -1.6134
207 S H -1.8730
208 N H -2.3845
209 T H -2.1495
210 K H -2.4826
211 V H -1.4607
212 D H -2.0968
213 K H -1.1726
214 T H -1.3244
215 V H 0.0000
216 E H -2.7434
217 R H -2.7625
2 I L 0.1558
3 Q L -1.4166
4 M L 0.0000
5 T L -1.2835
6 Q L 0.0000
7 S L -0.7313
8 P L -0.4518
9 S L -0.6867
10 S L -0.4954
11 L L -0.2576
12 S L -0.6491
13 A L -0.8059
14 S L -0.7014
15 V L 0.3787
16 G L -0.6661
17 D L -1.7038
18 R L -2.2900
19 V L 0.0000
20 T L -0.5718
21 I L 0.0000
22 T L -0.8919
23 C L 0.0000
24 R L -2.9582
25 A L 0.0000
26 S L -1.5524
27 Q L -1.4917
28 G L -1.1766
29 I L 0.0000
30 S L -0.5903
31 S L -0.4587
32 A L 0.2198
33 L L 0.0000
34 A L 0.0000
35 W L 0.0000
36 Y L 0.0000
37 Q L 0.0000
38 Q L 0.0000
39 K L -1.9545
40 P L -1.4640
41 G L -1.8245
42 K L -2.6709
43 A L -1.6972
44 P L 0.0000
45 K L -1.8202
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L 0.5924
50 S L 0.3463
51 A L 0.0000
52 S L 0.1137
53 Y L 0.9664
54 R L -0.3010
55 Y L -0.1418
56 T L -0.2821
57 G L -0.6177
58 V L 0.0000
59 P L -0.5791
60 S L -0.6916
61 R L -0.9298
62 F L 0.0000
63 S L -0.2937
64 G L -0.1715
65 S L -0.5013
66 G L -1.2733
67 S L -1.2965
68 G L -1.4480
69 T L -2.0855
70 D L -2.8173
71 F L 0.0000
72 T L -0.8651
73 F L 0.0000
74 T L -0.5975
75 I L 0.0000
76 S L -1.3645
77 S L -1.1197
78 L L 0.0000
79 Q L -0.7357
80 P L -1.5870
81 E L -2.0098
82 D L 0.0000
83 I L 0.0000
84 A L 0.0000
85 T L -0.6793
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 Q L 0.0000
90 Q L 0.0000
91 R L 0.6375
92 Y L 1.2784
93 S L 1.4052
94 L L 1.8528
95 W L 0.9438
96 R L 0.3554
97 T L -0.1012
98 F L 0.0000
99 G L 0.0000
100 Q L -1.5772
101 G L 0.0000
102 T L 0.0000
103 K L -0.9222
104 L L 0.0000
105 E L -1.0895
106 I L 0.0000
107 K L -1.2315
108 R L -0.7700
109 T L -0.0038
110 V L 0.7158
111 A L 0.2171
112 A L -0.0992
113 P L 0.0000
114 S L -0.1498
115 V L 0.0000
116 F L 0.1124
117 I L 0.0240
118 F L 0.0000
119 P L 0.0000
120 P L 0.0000
121 S L -1.2247
122 D L -2.4986
123 E L -2.0666
124 Q L 0.0000
125 L L -1.8843
126 K L -2.5594
127 S L -1.6097
128 G L -1.2050
129 T L -0.9947
130 A L 0.0000
131 S L 0.0000
132 V L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 L L 0.0000
137 N L 0.0000
138 N L -0.8019
139 F L 0.0000
140 Y L 0.0000
141 P L -1.3788
142 R L -2.2325
143 E L -2.7673
144 A L -1.8513
145 K L -1.5984
146 V L -0.6887
147 Q L -0.3139
148 W L 0.0000
149 K L -0.4935
150 V L 0.0000
151 D L -1.6531
152 N L -1.2929
153 A L -0.2206
154 L L 0.6568
155 Q L -0.1082
156 S L -0.4616
157 G L -0.9210
158 N L -0.8943
159 S L -1.1532
160 Q L -1.2881
161 E L -1.9125
162 S L -0.9307
163 V L -0.5760
164 T L -0.6191
165 E L -1.3206
166 Q L 0.0000
167 D L -1.8953
168 S L -2.1587
169 K L -2.7004
170 D L -2.1992
171 S L 0.0000
172 T L 0.0000
173 Y L 0.0000
174 S L 0.0000
175 L L 0.0000
176 S L 0.0000
177 S L 0.0000
178 T L -0.6722
179 L L 0.0000
180 T L -0.3904
181 L L -0.7334
182 S L -1.1731
183 K L -2.2010
184 A L -1.9491
185 D L -2.6448
186 Y L 0.0000
187 E L -3.5885
188 K L -3.5725
189 H L -2.9672
190 K L -3.0602
191 V L -1.6192
192 Y L 0.0000
193 A L 0.0000
194 C L 0.0000
195 E L -0.5834
196 V L 0.0000
197 T L -0.9514
198 H L 0.0000
199 Q L -1.3446
200 G L -0.4300
201 L L -0.2863
202 S L -0.4987
203 S L -0.4411
204 P L -0.4471
205 V L 0.0071
206 T L -0.5392
207 K L -0.9924
208 S L -0.7859
209 F L 0.0000
210 N L -2.1238
211 R L -2.7745
212 G L -2.4540
213 E L -2.7303
214 S L -2.0411
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Laboratory of Theory of Biopolymers 2018