| Chain sequence(s) |
H: QVQLVESGGGLVQVGGSLRLSCAVSGRTFSSLYMGWFRQAPGKEREFVAAISKSSGTTNYGDSVKGRFTISRDNAKSTVYLQMDSLLLEDTAVYYCAAGAPPWVGAYSYVPSPASAYAYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with H chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:45)
[INFO] Main: Simulation completed successfully. (00:00:46)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.6030 | |
| 2 | V | H | -1.0404 | |
| 3 | Q | H | -0.9248 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.2689 | |
| 6 | E | H | -0.3035 | |
| 7 | S | H | -0.7355 | |
| 8 | G | H | -0.9370 | |
| 9 | G | H | -0.5829 | |
| 11 | G | H | 0.1856 | |
| 12 | L | H | 1.1635 | |
| 13 | V | H | 0.7062 | |
| 14 | Q | H | -0.1836 | |
| 15 | V | H | 0.5167 | |
| 16 | G | H | -0.1799 | |
| 17 | G | H | -0.1944 | |
| 18 | S | H | -0.7032 | |
| 19 | L | H | -0.4584 | |
| 20 | R | H | -1.2510 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.3562 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.3630 | |
| 25 | V | H | 0.0000 | |
| 26 | S | H | -1.1148 | |
| 27 | G | H | -1.7073 | |
| 28 | R | H | -2.2562 | |
| 29 | T | H | -1.2771 | |
| 30 | F | H | 0.0000 | |
| 35 | S | H | -1.2418 | |
| 36 | S | H | -0.9412 | |
| 37 | L | H | 0.0000 | |
| 38 | Y | H | -0.2250 | |
| 39 | M | H | 0.0000 | |
| 40 | G | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | F | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -1.2844 | |
| 45 | A | H | -1.3310 | |
| 46 | P | H | -0.9910 | |
| 47 | G | H | -1.4114 | |
| 48 | K | H | -2.1241 | |
| 49 | E | H | -2.6795 | |
| 50 | R | H | -1.7742 | |
| 51 | E | H | -1.5821 | |
| 52 | F | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | A | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | 0.0000 | |
| 58 | K | H | -2.1183 | |
| 59 | S | H | -1.4629 | |
| 62 | S | H | -1.2165 | |
| 63 | G | H | -0.9009 | |
| 64 | T | H | -0.5029 | |
| 65 | T | H | -0.1847 | |
| 66 | N | H | -0.3917 | |
| 67 | Y | H | -0.9962 | |
| 68 | G | H | -1.3786 | |
| 69 | D | H | -2.4044 | |
| 70 | S | H | -1.7402 | |
| 71 | V | H | 0.0000 | |
| 72 | K | H | -2.2680 | |
| 74 | G | H | -1.5810 | |
| 75 | R | H | -1.2183 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.7407 | |
| 78 | I | H | 0.0000 | |
| 79 | S | H | -0.4281 | |
| 80 | R | H | 0.0000 | |
| 81 | D | H | -2.0785 | |
| 82 | N | H | -2.3257 | |
| 83 | A | H | -1.5375 | |
| 84 | K | H | -2.3009 | |
| 85 | S | H | -1.8137 | |
| 86 | T | H | 0.0000 | |
| 87 | V | H | 0.0000 | |
| 88 | Y | H | -0.3693 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -0.8263 | |
| 91 | M | H | 0.0000 | |
| 92 | D | H | -1.0379 | |
| 93 | S | H | -0.5634 | |
| 94 | L | H | 0.0000 | |
| 95 | L | H | 0.4487 | |
| 96 | L | H | 0.3598 | |
| 97 | E | H | -1.0796 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.1593 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | -0.2465 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | -0.1141 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | A | H | 0.0000 | |
| 107 | G | H | 0.0000 | |
| 108 | A | H | 0.3674 | |
| 109 | P | H | 0.3065 | |
| 110 | P | H | 0.7358 | |
| 111 | W | H | 1.7325 | |
| 111A | V | H | 2.1387 | |
| 111B | G | H | 1.2119 | |
| 111C | A | H | 1.3428 | |
| 111D | Y | H | 1.7069 | |
| 111E | S | H | 0.9504 | |
| 112E | Y | H | 1.4960 | |
| 112D | V | H | 0.8937 | |
| 112C | P | H | 0.6073 | |
| 112B | S | H | -0.1962 | |
| 112A | P | H | -0.2409 | |
| 112 | A | H | -0.3093 | |
| 113 | S | H | -0.2262 | |
| 114 | A | H | -0.0542 | |
| 115 | Y | H | 0.0000 | |
| 116 | A | H | 0.3028 | |
| 117 | Y | H | 0.2702 | |
| 118 | W | H | 0.2178 | |
| 119 | G | H | -0.3219 | |
| 120 | Q | H | -1.1546 | |
| 121 | G | H | -0.6289 | |
| 122 | T | H | -0.7299 | |
| 123 | Q | H | -0.8518 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.3520 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | 0.1659 | |
| 128 | S | H | 0.0551 |