| Chain sequence(s) |
A: GQVRQRYLYTDDAQQTEAHLEIREDGTVGGAADQSPESLLQLKALKPGVIQILGVKTSRFLCQRPDGALYGSLHFDPEACSFRELLLEDGYNVYQSEAHGLPLHLPGNKSPHRDPAPRGPARFLPLPG
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Mutated residues | LR98A |
| Energy difference between WT (input) and mutated protein (by FoldX) | 0.762463 kcal/mol |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:08)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:08)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:08)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:08)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:08)
[INFO] FoldX: Building mutant model (00:02:07)
[INFO] FoldX: Starting FoldX energy minimalization (00:02:15)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:03:05)
[INFO] Main: Simulation completed successfully. (00:03:06)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 14 | G | A | -1.2039 | |
| 15 | Q | A | -1.3363 | |
| 16 | V | A | -0.9769 | |
| 17 | R | A | -2.5737 | |
| 18 | Q | A | -2.0363 | |
| 19 | R | A | -1.5034 | |
| 20 | Y | A | -0.5191 | |
| 21 | L | A | 0.0000 | |
| 22 | Y | A | -0.8232 | |
| 23 | T | A | 0.0000 | |
| 24 | D | A | -2.4640 | |
| 25 | D | A | -3.2596 | |
| 26 | A | A | -2.9487 | |
| 27 | Q | A | -3.1922 | |
| 28 | Q | A | -2.7948 | |
| 29 | T | A | -2.3700 | |
| 30 | E | A | -3.3568 | |
| 31 | A | A | -2.4369 | |
| 32 | H | A | -1.5164 | |
| 33 | L | A | 0.0000 | |
| 34 | E | A | -1.5283 | |
| 35 | I | A | 0.0000 | |
| 36 | R | A | -3.7265 | |
| 37 | E | A | -3.9765 | |
| 38 | D | A | -3.3430 | |
| 39 | G | A | 0.0000 | |
| 40 | T | A | -1.6740 | |
| 41 | V | A | 0.0000 | |
| 42 | G | A | -0.8763 | |
| 43 | G | A | -1.4381 | |
| 44 | A | A | -1.3991 | |
| 45 | A | A | -1.5276 | |
| 46 | D | A | -2.6316 | |
| 47 | Q | A | -1.9597 | |
| 48 | S | A | -1.3258 | |
| 49 | P | A | -0.9339 | |
| 50 | E | A | -1.5248 | |
| 51 | S | A | 0.0000 | |
| 52 | L | A | -0.6508 | |
| 53 | L | A | 0.0000 | |
| 54 | Q | A | -0.8860 | |
| 55 | L | A | -1.0627 | |
| 56 | K | A | -1.0177 | |
| 57 | A | A | -0.8506 | |
| 58 | L | A | -0.5530 | |
| 59 | K | A | -1.8342 | |
| 60 | P | A | -1.3479 | |
| 61 | G | A | -1.9498 | |
| 62 | V | A | -1.6563 | |
| 63 | I | A | -0.7537 | |
| 64 | Q | A | 0.0000 | |
| 65 | I | A | 0.0000 | |
| 66 | L | A | 0.3121 | |
| 67 | G | A | 0.0000 | |
| 68 | V | A | -0.1371 | |
| 69 | K | A | -1.6564 | |
| 70 | T | A | -1.6309 | |
| 71 | S | A | -0.4674 | |
| 72 | R | A | -0.4192 | |
| 73 | F | A | 0.7009 | |
| 74 | L | A | 0.0000 | |
| 75 | C | A | 0.0000 | |
| 76 | Q | A | 0.0000 | |
| 77 | R | A | -2.4528 | |
| 78 | P | A | -2.2634 | |
| 79 | D | A | -2.4371 | |
| 80 | G | A | -1.6400 | |
| 81 | A | A | -1.1873 | |
| 82 | L | A | 0.0000 | |
| 83 | Y | A | -0.5968 | |
| 84 | G | A | 0.0000 | |
| 85 | S | A | 0.2490 | |
| 86 | L | A | 1.2429 | |
| 87 | H | A | 0.2701 | |
| 88 | F | A | 0.7278 | |
| 89 | D | A | -0.9082 | |
| 90 | P | A | -1.2532 | |
| 91 | E | A | -2.6919 | |
| 92 | A | A | -1.8632 | |
| 93 | C | A | 0.0000 | |
| 94 | S | A | 0.0000 | |
| 95 | F | A | 0.0000 | |
| 96 | R | A | -3.4037 | |
| 97 | E | A | -2.4090 | |
| 98 | R | A | -2.2190 | mutated: LR98A |
| 99 | L | A | -0.2948 | |
| 100 | L | A | -1.1341 | |
| 101 | E | A | -2.4726 | |
| 102 | D | A | -2.4807 | |
| 103 | G | A | -1.3749 | |
| 104 | Y | A | -0.8854 | |
| 105 | N | A | 0.0000 | |
| 106 | V | A | 0.0000 | |
| 107 | Y | A | 0.0000 | |
| 108 | Q | A | -2.2347 | |
| 109 | S | A | 0.0000 | |
| 110 | E | A | -3.2459 | |
| 111 | A | A | -2.2951 | |
| 112 | H | A | -1.9804 | |
| 113 | G | A | -1.7260 | |
| 114 | L | A | -1.4600 | |
| 115 | P | A | -1.1872 | |
| 116 | L | A | 0.0000 | |
| 117 | H | A | -0.6932 | |
| 118 | L | A | -0.5263 | |
| 119 | P | A | -0.9131 | |
| 120 | G | A | -1.5389 | |
| 121 | N | A | -1.8668 | |
| 122 | K | A | -3.2438 | |
| 123 | S | A | -2.2520 | |
| 124 | P | A | -2.5332 | |
| 125 | H | A | -2.8147 | |
| 126 | R | A | -3.6343 | |
| 127 | D | A | -3.6585 | |
| 128 | P | A | -2.2348 | |
| 129 | A | A | -1.1687 | |
| 130 | P | A | -1.3225 | |
| 131 | R | A | -1.9982 | |
| 132 | G | A | -1.4347 | |
| 133 | P | A | -1.0808 | |
| 134 | A | A | 0.0000 | |
| 135 | R | A | -1.7034 | |
| 136 | F | A | 0.0000 | |
| 137 | L | A | 0.0334 | |
| 138 | P | A | -0.0731 | |
| 139 | L | A | -0.0285 | |
| 140 | P | A | -0.9861 | |
| 141 | G | A | -1.4413 |