Project name: c0d6276f6cf56e1

Status: done

Started: 2024-12-20 12:03:53
Settings
Chain sequence(s) A: YVLTQPPSVSVAPGKTARIACEGNNIGSKSVHWYQQKPGQAPVLVVYDDSDRPSGIPDRFSGSNSGNTAALTISRVEAGDEADYFCQVWDSNSNHQVFGGGTKVTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHKSYSCQVTHEGSTVEKTVAPT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:09)
Show buried residues

Minimal score value
-3.1951
Maximal score value
1.8203
Average score
-0.9329
Total score value
-195.9168

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
2 Y A 1.1717
3 V A 1.8203
4 L A 0.0000
5 T A -0.2193
6 Q A 0.0000
7 P A -0.7348
8 P A -1.0177
9 S A -1.0360
11 V A -0.8263
12 S A -0.4198
13 V A 0.0000
14 A A -0.8429
15 P A -1.5952
16 G A -2.3187
17 K A -2.6991
18 T A -2.1872
19 A A 0.0000
20 R A -1.8536
21 I A 0.0000
22 A A -0.8721
23 C A 0.0000
24 E A -2.1382
25 G A -1.7497
26 N A -2.4648
27 N A -3.0255
28 I A 0.0000
29 G A -2.0297
36 S A -1.4232
37 K A -1.4116
38 S A -1.0812
39 V A 0.0000
40 H A -0.5669
41 W A 0.0000
42 Y A 0.7144
43 Q A -0.3414
44 Q A -1.1464
45 K A -1.8405
46 P A -1.5457
47 G A -1.3645
48 Q A -1.5833
49 A A -0.5430
50 P A -0.0238
51 V A 1.2151
52 L A 1.0776
53 V A 0.0000
54 V A 0.0000
55 Y A -1.3348
56 D A -2.5492
57 D A -2.0006
65 S A -1.7421
66 D A -2.4025
67 R A -1.8184
68 P A -0.7602
69 S A -0.7699
70 G A -0.7689
71 I A -0.6488
72 P A -1.2616
74 D A -2.3556
75 R A -1.8390
76 F A 0.0000
77 S A -1.3055
78 G A -1.2234
79 S A -0.9351
80 N A -1.5129
83 S A -1.5298
84 G A -2.2218
85 N A -3.0429
86 T A -1.9653
87 A A 0.0000
88 A A -0.8986
89 L A 0.0000
90 T A -1.1338
91 I A 0.0000
92 S A -2.3848
93 R A -3.0957
94 V A 0.0000
95 E A -2.7432
96 A A -1.3745
97 G A -1.3373
98 D A 0.0000
99 E A -1.4476
100 A A 0.0000
101 D A -2.0325
102 Y A 0.0000
103 F A 0.0528
104 C A 0.0000
105 Q A 0.4340
106 V A 0.0000
107 W A -0.2055
108 D A 0.0000
109 S A -1.4801
110 N A -1.7834
113 S A -1.5963
114 N A -2.2703
115 H A -2.0176
116 Q A -0.9421
117 V A 0.6803
118 F A 1.7005
119 G A 0.0000
120 G A -0.1882
121 G A -0.7024
122 T A 0.0000
123 K A -2.4202
124 V A 0.0000
125 T A -0.5449
126 V A 0.0000
127 L A 0.6817
128 G A -0.3133
129 Q A 0.0000
130 P A -1.1172
131 K A -2.2705
132 A A -1.3510
133 A A -0.8111
134 P A 0.0000
135 S A -0.3105
136 V A 0.0000
137 T A 0.2197
138 L A 0.6529
139 F A 1.5627
140 P A 0.5885
141 P A 0.0000
142 S A -0.9950
143 S A -1.7402
144 E A -2.7467
145 E A -2.3404
146 L A -2.1330
147 Q A -2.4501
148 A A -2.1398
149 N A -2.8687
150 K A -3.0033
151 A A 0.0000
152 T A -0.1236
153 L A 0.0000
154 V A 1.1337
155 C A 0.0000
156 L A 0.9751
157 I A 0.0000
158 S A -0.7938
159 D A -1.9254
160 F A 0.0000
161 Y A -1.3172
162 P A -1.1557
163 G A -0.9117
164 A A -0.1847
165 V A -0.0614
166 T A -0.0991
167 V A -0.0970
168 A A -0.6201
169 W A 0.0000
170 K A -1.4890
171 A A 0.0000
172 D A -1.4282
173 S A -1.0750
174 S A -0.9854
175 P A -1.0981
176 V A -0.9879
177 K A -1.8935
178 A A -1.0206
179 G A -0.9289
180 V A -0.8002
181 E A -1.7157
182 T A -0.5549
183 T A -0.5066
184 T A -0.3120
185 P A -0.5896
186 S A -1.2784
187 K A -2.6608
188 Q A -2.4568
189 S A -1.7178
190 N A -2.3358
191 N A -2.3264
192 K A -2.3173
193 Y A -1.6350
194 A A -0.8770
195 A A 0.0000
196 S A 0.1268
197 S A 0.0000
198 Y A 0.3800
199 L A 0.0000
200 S A -0.6116
201 L A -0.8108
202 T A -1.8839
203 P A -2.5152
204 E A -3.1951
205 Q A -2.3762
206 W A 0.0000
207 K A -3.1145
208 S A -2.4131
209 H A -2.3135
210 K A -2.3383
211 S A -1.4961
212 Y A 0.0000
213 S A -1.1926
214 C A 0.0000
215 Q A -1.2985
216 V A 0.0000
217 T A -0.6841
218 H A 0.0000
219 E A -2.2861
220 G A -1.4194
221 S A -0.8358
222 T A -0.7456
223 V A -0.7743
224 E A -2.1566
225 K A -1.5798
226 T A -0.8661
227 V A -0.0295
228 A A -0.6386
229 P A -0.8854
230 T A -0.2831
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Laboratory of Theory of Biopolymers 2018