| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVNQWYMAWYRQAPGKEREWVAAIRSTGVKTWYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDDGWQWDNYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:52)
[INFO] Main: Simulation completed successfully. (00:01:52)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.3523 | |
| 2 | V | A | -0.5776 | |
| 3 | Q | A | -0.5408 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 0.8929 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.6381 | |
| 8 | G | A | -1.0345 | |
| 9 | G | A | -0.8406 | |
| 10 | G | A | -0.0735 | |
| 11 | L | A | 0.9260 | |
| 12 | V | A | 0.0000 | |
| 13 | Q | A | -1.2805 | |
| 14 | A | A | -1.3596 | |
| 15 | G | A | -1.2765 | |
| 16 | G | A | -0.8717 | |
| 17 | S | A | -1.2097 | |
| 18 | L | A | -0.9434 | |
| 19 | R | A | -2.1356 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.4330 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | -0.1287 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5743 | |
| 26 | G | A | -0.8911 | |
| 27 | F | A | -0.7181 | |
| 28 | P | A | -1.3941 | |
| 29 | V | A | 0.0000 | |
| 30 | N | A | -2.3792 | |
| 31 | Q | A | -2.1510 | |
| 32 | W | A | 0.0000 | |
| 33 | Y | A | -1.5588 | |
| 34 | M | A | 0.0000 | |
| 35 | A | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | 0.0000 | |
| 38 | R | A | 0.0000 | |
| 39 | Q | A | -2.0972 | |
| 40 | A | A | -2.0313 | |
| 41 | P | A | -1.4329 | |
| 42 | G | A | -1.9736 | |
| 43 | K | A | -3.3692 | |
| 44 | E | A | -3.5853 | |
| 45 | R | A | -2.8059 | |
| 46 | E | A | -1.8933 | |
| 47 | W | A | -0.5805 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | R | A | -1.4261 | |
| 53 | S | A | -1.6698 | |
| 54 | T | A | -0.7686 | |
| 55 | G | A | -0.5654 | |
| 56 | V | A | 0.6916 | |
| 57 | K | A | -0.8062 | |
| 58 | T | A | -0.2327 | |
| 59 | W | A | -0.1555 | |
| 60 | Y | A | -0.5643 | |
| 61 | A | A | -1.2290 | |
| 62 | D | A | -2.3513 | |
| 63 | S | A | -1.7289 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.5498 | |
| 66 | G | A | -1.7918 | |
| 67 | R | A | -1.4766 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -0.7953 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5700 | |
| 72 | R | A | -1.2745 | |
| 73 | D | A | -2.1053 | |
| 74 | N | A | -2.7829 | |
| 75 | A | A | -1.8529 | |
| 76 | K | A | -2.4570 | |
| 77 | N | A | -2.0183 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6658 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2447 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.3716 | |
| 85 | S | A | -1.1342 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.0734 | |
| 88 | P | A | -1.8141 | |
| 89 | E | A | -2.2559 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -0.9245 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.6092 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.2150 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -1.9888 | |
| 100 | D | A | -2.2986 | |
| 101 | D | A | -1.4765 | |
| 102 | G | A | -0.6113 | |
| 103 | W | A | 0.1714 | |
| 104 | Q | A | -1.0499 | |
| 105 | W | A | -0.3095 | |
| 106 | D | A | -2.0470 | |
| 107 | N | A | -2.4295 | |
| 108 | Y | A | -1.6650 | |
| 109 | D | A | -2.0994 | |
| 110 | Y | A | -0.6352 | |
| 111 | W | A | -0.0702 | |
| 112 | G | A | -0.0076 | |
| 113 | Q | A | -0.9203 | |
| 114 | G | A | 0.0000 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.1576 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3254 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7511 |