Project name: c12725d40a3d35e

Status: done

Started: 2026-06-22 16:07:42
Settings
Chain sequence(s) B: DLRAKLDEVMKKLKEFKKEVKEQGTPALEAMKKLIEIAKMKGEALKALEA
input PDB
Selected Chain(s) B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with B chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:25)
Show buried residues

Minimal score value
-5.2853
Maximal score value
0.6686
Average score
-2.1013
Total score value
-105.0667

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 D B -2.5531
2 L B 0.0000
3 R B -3.0439
4 A B -2.7702
5 K B -3.1815
6 L B -2.9368
7 D B -3.8745
8 E B -3.8122
9 V B 0.0000
10 M B -2.6032
11 K B -4.1383
12 K B -3.7463
13 L B -3.1809
14 K B -4.4198
15 E B -4.6881
16 F B 0.0000
17 K B -4.7335
18 K B -5.2853
19 E B -4.3773
20 V B -3.1877
21 K B -4.1846
22 E B -4.2469
23 Q B -3.4165
24 G B -2.2382
25 T B -1.6336
26 P B -0.2550
27 A B 0.2756
28 L B 0.6686
29 E B -0.9452
30 A B 0.0000
31 M B 0.3620
32 K B -1.4240
33 K B -1.4619
34 L B -0.3868
35 I B -0.4797
36 E B -1.8178
37 I B 0.0000
38 A B -1.3815
39 K B -2.4375
40 M B -2.1539
41 K B -2.3496
42 G B -2.0377
43 E B -2.9184
44 A B 0.0000
45 L B -1.3299
46 K B -2.2980
47 A B -1.3619
48 L B -0.5415
49 E B -1.7840
50 A B -0.7562
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018