Project name: query_structure

Status: done

Started: 2026-03-16 20:40:25
Settings
Chain sequence(s) A: VKVCDTCGDAGREDLLAICSRCSDGAEHTYCMRVMLKKVPKGYWLCEECKFA
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:37)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:38)
Show buried residues

Minimal score value
-3.7212
Maximal score value
1.6292
Average score
-0.8481
Total score value
-44.1009

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V A 1.6292
2 K A -0.4568
3 V A -0.5898
4 C A 0.0000
5 D A -2.2411
6 T A -1.0439
7 C A -0.5826
8 G A -1.4480
9 D A -2.4869
10 A A -1.5564
11 G A -2.3156
12 R A -3.4421
13 E A -3.7212
14 D A -3.3471
15 L A -2.1940
16 L A -1.3045
17 A A 0.0000
18 I A 0.5377
19 C A 0.0000
20 S A -0.4598
21 R A -2.0092
22 C A -1.4192
23 S A -1.3166
24 D A -2.3589
25 G A 0.0000
26 A A 0.0000
27 E A -0.7446
28 H A 0.0000
29 T A 0.0000
30 Y A 0.5761
31 C A 0.4670
32 M A 0.1330
33 R A -0.6499
34 V A 1.3804
35 M A 1.1052
36 L A -0.0458
37 K A -1.7265
38 K A -2.4741
39 V A -1.3883
40 P A -1.0622
41 K A -1.8477
42 G A -0.5240
43 Y A 0.7619
44 W A 0.0000
45 L A -0.0466
46 C A 0.0000
47 E A -2.1842
48 E A -2.3859
49 C A 0.0000
50 K A -1.6119
51 F A 0.4437
52 A A -0.1497
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Laboratory of Theory of Biopolymers 2018