Project name: 5DK3 AB

Status: done

Started: 2024-07-11 11:10:21
Settings
Chain sequence(s) A: EIVLTQSPATLSLSPGERATLSCRASKGVSTSGYSYLHWYQQKPGQAPRLLIYLASYLESGVPARFSGSGSGTDFTLTISSLEPEDFAVYYCQHSRDLPLTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
B: QVQLVQSGVEVKKPGASVKVSCKASGYTFTNYYMYWVRQAPGQGLEWMGGINPSNGGTNFNEKFKNRVTLTTDSSTTTAYMELKSLQFDDTAVYYCARRDYRFDMGFDYWGQGTTVTVSSASTKGPSVFPLAPCSRSTSESTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTKTYTCNVDHKPSNTKVDKRVESKYGPPCPPCEFLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSQEDPEVQFNWYVDGVEVHNAKTKPREEQFNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKGLPSSIEKTISKAKGQPREPQVYTLPPSQEEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSRLTVDKSRWQQGNVFSCSVMHEALHNHYTQKSLSLS
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:25)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:31)
Show buried residues

Minimal score value
-4.0523
Maximal score value
2.243
Average score
-0.7694
Total score value
-507.0105

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E A -1.6330
2 I A 0.0000
3 V A 0.6721
4 L A 0.0000
5 T A -0.4756
6 Q A -0.5396
7 S A -0.6977
8 P A -0.4063
9 A A -0.5007
10 T A -0.6328
11 L A -0.4406
12 S A -0.6855
13 L A -1.1384
14 S A -1.5511
15 P A -1.8877
16 G A -1.8747
17 E A -2.5525
18 R A -2.8219
19 A A 0.0000
20 T A -0.6577
21 L A 0.0000
22 S A -0.8097
23 C A 0.0000
24 R A -2.0377
25 A A 0.0000
26 S A -1.1355
27 K A -2.4555
28 G A -1.7915
29 V A 0.0000
30 S A -0.7082
31 T A -0.4148
32 S A -0.2687
33 G A -0.2627
34 Y A 0.1496
35 S A 0.0000
36 Y A -0.4047
37 L A 0.0000
38 H A 0.0000
39 W A 0.0000
40 Y A 0.0000
41 Q A 0.0000
42 Q A 0.0000
43 K A -1.6448
44 P A -1.3863
45 G A -1.5750
46 Q A -1.9948
47 A A -1.2265
48 P A 0.0000
49 R A -1.0269
50 L A 0.0000
51 L A 0.0000
52 I A 0.0000
53 Y A 0.5557
54 L A 0.0000
55 A A 0.0000
56 S A 0.2221
57 Y A 0.9625
58 L A 0.7810
59 E A -0.0163
60 S A -0.3354
61 G A -0.5353
62 V A 0.0000
63 P A -0.2536
64 A A -0.2088
65 R A -0.7795
66 F A 0.0000
67 S A -0.1479
68 G A -0.0918
69 S A -0.6400
70 G A -1.1395
71 S A -0.9842
72 G A -1.1669
73 T A -1.8375
74 D A -2.3412
75 F A 0.0000
76 T A -0.7857
77 L A 0.0000
78 T A -0.6814
79 I A 0.0000
80 S A -1.6973
81 S A -1.8735
82 L A 0.0000
83 E A -2.3024
84 P A -2.2508
85 E A -2.3982
86 D A 0.0000
87 F A -1.4747
88 A A 0.0000
89 V A 0.0000
90 Y A 0.0000
91 Y A 0.0000
92 C A 0.0000
93 Q A 0.0000
94 H A 0.0000
95 S A -0.9980
96 R A -2.2021
97 D A -1.9519
98 L A -0.8723
99 P A -1.2766
100 L A 0.0000
101 T A -0.3406
102 F A 0.0000
103 G A 0.0000
104 G A -0.7212
105 G A -0.8690
106 T A 0.0000
107 K A -1.5999
108 V A 0.0000
109 E A -1.4515
110 I A 0.0000
111 K A -1.1905
112 R A -0.9938
113 T A -0.0930
114 V A 0.2412
115 A A -0.1336
116 A A -0.1779
117 P A 0.0000
118 S A -0.2012
119 V A 0.0000
120 F A -0.0574
121 I A 0.0000
122 F A 0.0000
123 P A -0.2573
124 P A 0.0000
125 S A -1.2365
126 D A -2.5023
127 E A -2.0850
128 Q A 0.0000
129 L A -2.0744
130 K A -2.5770
131 S A -1.6692
132 G A -1.3553
133 T A -0.9844
134 A A 0.0000
135 S A 0.0000
136 V A 0.0000
137 V A 0.0000
138 C A 0.0000
139 L A 0.0000
140 L A 0.0000
141 N A 0.0000
142 N A -0.9510
143 F A 0.0000
144 Y A 0.0000
145 P A -1.7179
146 R A -3.1133
147 E A -3.2464
148 A A -2.2737
149 K A -2.2648
150 V A -1.1684
151 Q A -0.7786
152 W A 0.0000
153 K A -0.7157
154 V A 0.0000
155 D A -1.5755
156 N A -1.3939
157 A A -0.2397
158 L A 0.6785
159 Q A -0.3520
160 S A -0.7082
161 G A -1.2991
162 N A -1.6768
163 S A -1.5318
164 Q A -1.4698
165 E A -1.9062
166 S A -0.9932
167 V A -0.8115
168 T A -1.1523
169 E A -2.2892
170 Q A 0.0000
171 D A -2.0599
172 S A -2.3631
173 K A -2.7300
174 D A -2.0115
175 S A 0.0000
176 T A 0.0000
177 Y A -1.3527
178 S A 0.0000
179 L A 0.0000
180 S A 0.0000
181 S A 0.0000
182 T A -0.7672
183 L A 0.0000
184 T A -0.5955
185 L A -0.9263
186 S A -1.1783
187 K A -2.2219
188 A A -1.9910
189 D A -2.7164
190 Y A 0.0000
191 E A -3.2916
192 K A -3.4506
193 H A -2.5872
194 K A -2.3246
195 V A -0.8596
196 Y A 0.0000
197 A A 0.0000
198 C A 0.0000
199 E A -0.9199
200 V A 0.0000
201 T A -1.1751
202 H A 0.0000
203 Q A -1.6085
204 G A -0.4500
205 L A -0.2411
206 S A -0.4799
207 S A -0.4053
208 P A -0.4835
209 V A -0.0204
210 T A -0.5091
211 K A -0.7401
212 S A -0.6048
213 F A 0.0000
214 N A -1.3772
215 R A -1.8584
216 G A -1.6562
217 E A -2.0514
218 C A -0.5817
1 Q B -1.4303
2 V B -0.7883
3 Q B -0.9692
4 L B 0.0000
5 V B 0.5181
6 Q B 0.0000
7 S B -0.3614
8 G B -0.4999
9 V B -0.4445
10 E B -0.8260
11 V B -0.4434
12 K B -1.1885
13 K B -1.9144
14 P B -1.3488
15 G B -1.3008
16 A B -1.4373
17 S B -1.8259
18 V B 0.0000
19 K B -2.2930
20 V B 0.0000
21 S B -0.4740
22 C B 0.0000
23 K B -0.4619
24 A B 0.0000
25 S B -0.6623
26 G B -0.9499
27 Y B -0.4959
28 T B -0.3958
29 F B 0.0000
30 T B -0.7107
31 N B -1.2958
32 Y B -0.2915
33 Y B -0.1408
34 M B 0.0000
35 Y B 0.0000
36 W B 0.0000
37 V B 0.0000
38 R B 0.0000
39 Q B -0.6289
40 A B -1.0209
41 P B -1.0964
42 G B -1.2237
43 Q B -1.7452
44 G B -1.1524
45 L B 0.0000
46 E B -0.5724
47 W B 0.0000
48 M B 0.0000
49 G B 0.0000
50 G B 0.0000
51 I B 0.0000
52 N B 0.0000
53 P B -0.8768
54 S B -1.1012
55 N B -1.6583
56 G B -1.1799
57 G B -1.1267
58 T B -0.9694
59 N B -1.5461
60 F B -1.6731
61 N B -2.0893
62 E B -3.4331
63 K B -3.1798
64 F B 0.0000
65 K B -3.2959
66 N B -2.7452
67 R B -2.3229
68 V B 0.0000
69 T B -1.1595
70 L B 0.0000
71 T B -0.3959
72 T B -0.6564
73 D B -0.9363
74 S B -0.7138
75 S B -0.5523
76 T B -0.5728
77 T B -0.5873
78 T B 0.0000
79 A B 0.0000
80 Y B -0.6439
81 M B 0.0000
82 E B -1.9082
83 L B 0.0000
84 K B -2.3940
85 S B -1.6184
86 L B 0.0000
87 Q B -1.0041
88 F B 0.3362
89 D B -1.1291
90 D B 0.0000
91 T B -0.2704
92 A B 0.0000
93 V B 0.1164
94 Y B 0.0000
95 Y B 0.0000
96 C B 0.0000
97 A B 0.0000
98 R B 0.0000
99 R B -0.1638
100 D B -0.3016
101 Y B 0.0066
102 R B -0.9835
103 F B 0.6583
104 D B 0.3744
105 M B 0.4801
106 G B 0.0000
107 F B 0.0000
108 D B -0.3190
109 Y B 0.0202
110 W B -0.2160
111 G B 0.0000
112 Q B -1.2453
113 G B -0.6290
114 T B 0.0000
115 T B -0.1547
116 V B 0.0000
117 T B 0.0000
118 V B 0.0000
119 S B -0.6136
120 S B -0.6887
121 A B -0.4986
122 S B -0.5276
123 T B -0.4635
124 K B -1.0074
125 G B -1.4144
126 P B -0.6554
127 S B -0.3580
128 V B 0.0000
129 F B 0.0000
130 P B -0.8608
131 L B 0.0000
132 A B -0.1522
133 P B -0.2272
134 C B -0.5560
135 S B -0.7724
136 R B -1.2614
137 S B -1.1062
138 T B -1.1617
139 S B -1.3831
140 E B -1.9329
141 S B -1.0689
142 T B -0.7335
143 A B 0.0000
144 A B 0.0000
145 L B 0.0000
146 G B 0.0000
147 C B 0.0000
148 L B 0.0000
149 V B 0.0000
150 K B -0.2586
151 D B -0.3280
152 Y B 0.0000
153 F B -0.1323
154 P B 0.0000
155 E B -0.5981
156 P B -0.7636
157 V B 0.0000
158 T B -0.8604
159 V B -0.5159
160 S B -0.5268
161 W B 0.0000
162 N B -1.0125
163 S B -0.7436
164 G B -0.5634
165 A B -0.2426
166 L B -0.0663
167 T B -0.1803
168 S B -0.1958
169 G B -0.2433
170 V B 0.1691
171 H B -0.3049
172 T B 0.0209
173 F B 0.0000
174 P B -0.3755
175 A B 0.1435
176 V B 0.4258
177 L B 1.1782
178 Q B 0.2438
179 S B -0.1027
180 S B -0.2439
181 G B 0.0169
182 L B 0.1903
183 Y B 0.4435
184 S B 0.0000
185 L B 0.0000
186 S B 0.0000
187 S B 0.0000
188 V B 0.0000
189 V B 0.0000
190 T B -0.1240
191 V B 0.0000
192 P B -0.6143
193 S B -0.8956
194 S B -0.5361
195 S B -0.7957
196 L B 0.0000
197 G B 0.0000
198 T B -0.9009
199 K B -1.5982
200 T B -1.4719
201 Y B 0.0000
202 T B 0.0000
203 C B 0.0000
204 N B -1.7377
205 V B 0.0000
206 D B -2.5875
207 H B 0.0000
208 K B -2.9662
209 P B -1.5962
210 S B -1.8322
211 N B -2.6598
212 T B -2.2571
213 K B -2.9418
214 V B -1.8836
215 D B -2.7046
216 K B -2.1914
217 R B -2.5816
218 V B 0.0000
219 E B -1.4747
220 S B -1.5079
221 K B -1.4623
222 Y B 0.4165
223 G B -0.3302
224 P B -0.4775
225 P B -0.4375
226 C B -0.0561
227 P B 0.0166
228 P B 0.1755
229 C B 0.6330
233 E B -0.9498
234 F B 1.6481
235 L B 1.4973
236 G B 0.3498
237 G B 0.0938
238 P B -0.1306
239 S B -0.0653
240 V B 0.0000
241 F B 1.2847
242 L B 0.0000
243 F B 1.0399
244 P B -0.2344
245 P B -1.4371
246 K B -2.8097
247 P B -2.5930
248 K B -2.9632
249 D B -2.5971
250 T B -0.7168
251 L B 1.5440
252 M B 2.2430
253 I B 2.0296
254 S B 0.3162
255 R B -0.9589
256 T B -0.7488
257 P B -1.1981
258 E B -1.1946
259 V B 0.0000
260 T B -0.0284
261 C B 0.0000
262 V B 0.0000
263 V B 0.0000
264 V B -0.1382
265 D B -0.6123
266 V B 0.0000
267 S B -1.7485
268 Q B -2.7566
269 E B -3.2093
270 D B -2.7205
271 P B -3.0103
272 E B -3.1682
273 V B -1.8661
274 Q B -1.4359
275 F B -0.7061
276 N B -0.8973
277 W B 0.0000
278 Y B -0.5917
279 V B 0.0000
280 D B -1.1204
281 G B -0.5579
282 V B 0.5101
283 E B -0.7448
284 V B -0.7490
285 H B -1.8887
286 N B -2.1359
287 A B -1.8516
288 K B -2.4005
289 T B -1.8497
290 K B -2.3858
291 P B -2.3506
292 R B -4.0523
293 E B -4.0510
294 E B -3.6552
295 Q B -2.1763
296 F B -0.4001
297 N B -1.0553
298 S B -1.1001
299 T B -1.6350
300 Y B -2.7023
301 R B -2.6299
302 V B 0.0000
303 V B -1.1119
304 S B 0.0000
305 V B 0.0000
306 L B 0.0000
307 T B -0.6736
308 V B -0.2402
309 L B -0.4463
310 H B -1.4022
311 Q B -1.4850
312 D B 0.0000
313 W B -0.4373
314 L B -0.3434
315 N B 0.0000
316 G B -1.2911
317 K B 0.0000
318 E B -1.5369
319 Y B 0.0000
320 K B -1.2700
321 C B 0.0000
322 K B -1.1134
323 V B 0.0000
324 S B -1.1203
325 N B 0.0000
326 K B -2.6424
327 G B -2.0091
328 L B -0.7235
329 P B -0.7189
330 S B -0.5561
331 S B -0.6686
332 I B -0.7656
333 E B -1.5809
334 K B -0.8971
335 T B -0.6757
336 I B -0.2316
337 S B -0.8861
338 K B -1.3352
339 A B -1.1441
340 K B -2.1189
341 G B -1.5278
342 Q B -1.7108
343 P B -1.7075
344 R B -1.9521
345 E B -2.8474
346 P B 0.0000
347 Q B -1.3711
348 V B 0.0000
349 Y B 0.5001
350 T B 0.3060
351 L B 0.5942
352 P B -0.1116
353 P B -0.8089
354 S B -1.4085
355 Q B -2.2542
356 E B -2.8237
357 E B -2.4182
358 M B -2.1525
359 T B -2.0238
360 K B -3.0762
361 N B -2.9593
362 Q B -2.7586
363 V B 0.0000
364 S B -0.6771
365 L B 0.0000
366 T B 0.1115
367 C B 0.0000
368 L B 0.5193
369 V B 0.0000
370 K B -0.5674
371 G B -1.1482
372 F B 0.0000
373 Y B 0.0000
374 P B -1.3405
375 S B -0.7275
376 D B -1.9217
377 I B -0.8829
378 A B -0.2492
379 V B 0.0000
380 E B -1.6604
381 W B 0.0000
382 E B -1.7128
383 S B 0.0000
384 N B -1.6580
385 G B -1.6691
386 Q B -2.1071
387 P B -1.9538
388 E B -2.0823
389 N B -2.4726
390 N B -2.3115
391 Y B -1.9590
392 K B -2.3297
393 T B -1.0515
394 T B -0.2825
395 P B -0.0857
396 P B 0.4259
397 V B 1.4408
398 L B 0.8334
399 D B -0.3842
400 S B -0.9234
401 D B -1.7846
402 G B 0.0000
403 S B 0.0000
404 F B 0.2107
405 F B 0.6375
406 L B 0.0000
407 Y B 0.4525
408 S B 0.0000
409 R B -1.4753
410 L B 0.0000
411 T B -1.4238
412 V B 0.0000
413 D B -2.7049
414 K B -2.7622
415 S B -2.2357
416 R B -2.0712
417 W B 0.0000
418 Q B -2.3568
419 Q B -2.1540
420 G B -1.3800
421 N B -0.9447
422 V B -0.2207
423 F B 0.0000
424 S B 0.0000
425 C B 0.0000
426 S B 0.0000
427 V B 0.0000
428 M B -0.8069
429 H B 0.0000
430 E B -2.8546
431 A B -2.1784
432 L B -2.0115
433 H B -2.1755
434 N B -2.2298
435 H B -2.2363
436 Y B -0.9304
437 T B -0.9288
438 Q B -1.1752
439 K B -1.3449
440 S B -0.7049
441 L B 0.0000
442 S B -0.2259
443 L B -0.2898
444 S B -0.2241
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Laboratory of Theory of Biopolymers 2018