Project name: ATPase_ref2

Status: done

Started: 2026-02-11 17:27:39
Settings
Chain sequence(s) A: SEVDELAERLLARIREYEAETGRRYVGKTTGLALAIVEEVKKHPEKAALAAEAYRRVLLAERPELYGPFADAIAAAIAAGDAAAVAALGAEVDAVREAATGVTYSPEDRARGAAAAAELVKELLS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:57)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:58)
Show buried residues

Minimal score value
-4.3413
Maximal score value
0.2444
Average score
-1.285
Total score value
-160.6237

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 S A -2.1263
2 E A -3.0990
3 V A -2.8496
4 D A -4.1461
5 E A -4.3413
6 L A 0.0000
7 A A 0.0000
8 E A -4.0651
9 R A -3.6975
10 L A 0.0000
11 L A -2.1794
12 A A -2.5604
13 R A -2.8447
14 I A 0.0000
15 R A -3.6492
16 E A -3.5362
17 Y A -2.9322
18 E A -3.3779
19 A A -2.8420
20 E A -2.9973
21 T A -2.3203
22 G A -2.5114
23 R A -3.2677
24 R A -3.1108
25 Y A 0.0000
26 V A -1.2883
27 G A -0.7943
28 K A -0.3629
29 T A 0.0000
30 T A -0.3028
31 G A -0.3761
32 L A 0.0000
33 A A 0.0000
34 L A -0.1351
35 A A -0.8717
36 I A 0.0000
37 V A 0.0000
38 E A -2.8850
39 E A 0.0000
40 V A 0.0000
41 K A -3.7439
42 K A -3.5100
43 H A -2.8103
44 P A -2.5649
45 E A -2.5889
46 K A -1.7337
47 A A -1.3138
48 A A -0.4479
49 L A -0.7859
50 A A 0.0000
51 A A 0.0000
52 E A -1.7545
53 A A 0.0000
54 Y A 0.0000
55 R A -1.6670
56 R A -1.5955
57 V A 0.0000
58 L A 0.0000
59 L A -0.8419
60 A A -0.5258
61 E A -1.3709
62 R A -2.4961
63 P A -1.8489
64 E A -2.4382
65 L A -1.2054
66 Y A 0.0000
67 G A -1.3487
68 P A -0.8740
69 F A 0.0000
70 A A 0.0000
71 D A -2.0624
72 A A -0.9073
73 I A 0.0000
74 A A -1.1017
75 A A -0.7545
76 A A 0.0000
77 I A 0.0000
78 A A -0.6694
79 A A -0.5049
80 G A -1.5688
81 D A -1.3048
82 A A -0.8271
83 A A -0.0980
84 A A -0.0738
85 V A 0.0000
86 A A -0.0423
87 A A -0.1204
88 L A -0.2773
89 G A 0.0000
90 A A -0.6822
91 E A -1.6551
92 V A 0.0000
93 D A -0.9085
94 A A -0.9424
95 V A -0.4312
96 R A 0.0000
97 E A -1.5253
98 A A -0.6044
99 A A -0.2601
100 T A -0.4072
101 G A -0.6457
102 V A 0.2444
103 T A -0.2767
104 Y A -0.5634
105 S A -1.2596
106 P A -2.0441
107 E A -3.0282
108 D A -2.6346
109 R A -2.9861
110 A A -2.2065
111 R A -2.4125
112 G A 0.0000
113 A A -1.2585
114 A A -1.0833
115 A A -1.2153
116 A A 0.0000
117 A A -1.8544
118 E A -2.8583
119 L A 0.0000
120 V A 0.0000
121 K A -3.2270
122 E A -3.0515
123 L A -1.8503
124 L A 0.0000
125 S A -1.7462
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Laboratory of Theory of Biopolymers 2018