Project name: query_structure

Status: done

Started: 2026-03-16 20:28:13
Settings
Chain sequence(s) A: LPAPKNLVVSEVTEDSLRLSWDDPWAFYESFLIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVHNVYKDTNMRGLPLSAEFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:54)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:55)
Show buried residues

Minimal score value
-2.9637
Maximal score value
1.3959
Average score
-0.9273
Total score value
-87.1668

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.7921
2 P A 0.4634
3 A A -0.0190
4 P A 0.0000
5 K A -2.3592
6 N A -1.5867
7 L A -0.2579
8 V A 0.9158
9 V A 0.0915
10 S A -0.6950
11 E A -1.8759
12 V A -0.9455
13 T A -1.5500
14 E A -2.7823
15 D A -2.7139
16 S A -2.1594
17 L A 0.0000
18 R A -1.6919
19 L A 0.0000
20 S A -0.7030
21 W A 0.0000
22 D A -1.9084
23 D A 0.0000
24 P A -0.0034
25 W A 1.3959
26 A A 0.6873
27 F A 1.1800
28 Y A 0.0000
29 E A -2.2326
30 S A -1.5644
31 F A 0.0000
32 L A -0.3305
33 I A 0.0000
34 Q A -0.5575
35 Y A -0.6295
36 Q A -1.5271
37 E A -2.1403
38 S A -2.1156
39 E A -2.3917
40 K A -1.9044
41 V A 0.0513
42 G A -0.9412
43 E A -1.9009
44 A A -0.9804
45 I A -0.4340
46 N A -1.0020
47 L A -0.0985
48 T A -0.1555
49 V A 0.0000
50 P A -1.1681
51 G A -1.2554
52 S A -1.2919
53 E A -1.7359
54 R A -1.3166
55 S A -1.0071
56 Y A -1.0805
57 D A -2.1514
58 L A 0.0000
59 T A -1.5034
60 G A -1.4839
61 L A 0.0000
62 K A -2.9637
63 P A -2.5158
64 G A -1.8618
65 T A -2.2401
66 E A -2.7800
67 Y A 0.0000
68 T A -1.4631
69 V A 0.0000
70 S A 0.0000
71 I A 0.0000
72 Y A 0.0000
73 G A 0.0000
74 V A -1.1581
75 H A -1.3561
76 N A -2.3368
77 V A -0.5989
78 Y A -0.1126
79 K A -2.1889
80 D A -2.7274
81 T A -1.9615
82 N A -2.6205
83 M A -1.3106
84 R A -1.6069
85 G A 0.0000
86 L A 1.2933
87 P A 0.3378
88 L A 0.0391
89 S A -0.2160
90 A A -0.5465
91 E A -2.1574
92 F A 0.0000
93 T A -1.6409
94 T A -1.8989
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Laboratory of Theory of Biopolymers 2018