Project name: AAB-PP3119

Status: done

Started: 2026-03-31 14:35:45
Settings
Chain sequence(s) H: QVQLVESGGGVVQPGESLKISCAASGFTFSSYGMHWVRQAPGKGLEWVSAISGSGGTAFYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTAVYYCARSTYYYGASGYDYYFEPWGPGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQHIRSSLAWYQQKPGKAPKLLIYGASSRATGIPDRFSGSGSGTDFTLTISSLQPEDFATYYCQHTYITPYTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage No
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       runJob:   FoldX not utilized. Treating input pdb file as it was already optimized.    (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:02)
Show buried residues

Minimal score value
-3.1595
Maximal score value
2.0705
Average score
-0.5552
Total score value
-128.797

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
0 Q H -1.2806
1 V H -0.6540
2 Q H -0.6224
3 L H 0.0000
4 V H 1.3911
5 E H 0.0000
6 S H -0.1253
7 G H -0.7670
8 G H 0.1446
9 G H 0.9246
10 V H 1.5526
11 V H 0.0000
12 Q H -1.7776
13 P H -2.0810
14 G H -2.0368
15 E H -2.1779
16 S H -1.5859
17 L H -0.9934
18 K H -1.9323
19 I H 0.0000
20 S H -0.3153
21 C H 0.0000
22 A H 0.0504
23 A H -0.3289
24 S H -0.5066
25 G H -0.8313
26 F H -0.2838
27 T H -0.1923
28 F H 0.0000
29 S H -0.8502
30 S H -0.1091
31 Y H 0.2078
32 G H 0.0172
33 M H 0.0000
34 H H 0.0000
35 W H 0.0000
36 V H 0.0000
37 R H 0.0000
38 Q H -0.7218
39 A H -1.0372
40 P H -0.9825
41 G H -1.5065
42 K H -2.3871
43 G H -1.6255
44 L H 0.0000
45 E H -1.2511
46 W H 0.0000
47 V H 0.0000
48 S H 0.0000
49 A H 0.0000
50 I H 0.0000
51 S H -0.2607
52 G H -0.5320
53 S H -0.7477
54 G H -0.8492
55 G H -0.7230
56 T H -0.1189
57 A H 0.5477
58 F H 1.1046
59 Y H -0.1042
60 A H -1.0733
61 D H -2.2886
62 S H -1.7151
63 V H 0.0000
64 K H -2.3581
65 G H -1.6948
66 R H -1.2444
67 F H 0.0000
68 T H -0.6001
69 I H 0.0000
70 S H -0.4556
71 R H -1.1005
72 D H -1.6520
73 N H -1.8105
74 S H -1.6313
75 K H -2.4372
76 N H -1.8637
77 T H -1.0034
78 L H 0.0000
79 Y H -0.4623
80 L H 0.0000
81 Q H -1.1143
82 M H 0.0000
83 N H -1.7014
84 S H -1.6370
85 L H 0.0000
86 R H -2.7598
87 A H -1.9126
88 E H -2.3323
89 D H 0.0000
90 T H -0.4080
91 A H 0.0000
92 V H 0.9023
93 Y H 0.0000
94 Y H 0.0000
95 C H 0.0000
96 A H 0.0000
97 R H -0.2989
98 S H 0.0000
99 T H 0.8038
100 Y H 2.0070
101 Y H 1.7235
102 Y H 1.6067
103 G H 0.1608
104 A H -0.0085
105 S H 0.0704
106 G H 0.3036
107 Y H 1.6192
108 D H 1.2459
109 Y H 1.5525
110 Y H 0.5837
111 F H 0.0000
112 E H -0.8624
113 P H -0.8057
114 W H 0.0000
115 G H 0.0000
116 P H -0.3679
117 G H 0.1698
118 T H 0.7473
119 L H 1.7382
120 V H 0.0000
121 T H 0.3722
122 V H 0.0000
123 S H -0.6640
124 S H -0.5968
125 D L -2.0064
126 I L 0.0000
127 Q L -2.1926
128 M L 0.0000
129 T L -1.2817
130 Q L 0.0000
131 S L -0.7315
132 P L -0.5982
133 S L -0.9637
134 S L -1.1336
135 L L -0.6524
136 S L -0.7043
137 A L 0.0000
138 S L -0.1484
139 V L 0.7175
140 G L -0.7083
141 D L -1.6689
142 R L -2.3426
143 V L 0.0000
144 T L -0.6344
145 I L 0.0000
146 T L -0.9694
147 C L 0.0000
148 R L -3.0419
149 A L 0.0000
150 S L -2.2562
151 Q L -2.8578
152 H L -2.5756
153 I L 0.0000
154 R L -2.6068
155 S L -1.4968
156 S L -0.4121
157 L L 0.0000
158 A L 0.0000
159 W L 0.0000
160 Y L 0.0000
161 Q L -0.9748
162 Q L 0.0000
163 K L -2.1559
164 P L -1.4648
165 G L -1.6522
166 K L -2.5375
167 A L -1.5365
168 P L 0.0000
169 K L -1.9942
170 L L 0.0000
171 L L 0.0000
172 I L 0.0000
173 Y L -0.2601
174 G L -0.8997
175 A L 0.0000
176 S L -0.8118
177 S L -0.8542
178 R L -1.6955
179 A L -0.9829
180 T L -0.6042
181 G L -0.9196
182 I L 0.0000
183 P L -1.3876
184 D L -2.3082
185 R L -1.6190
186 F L 0.0000
187 S L -1.0280
188 G L -0.6052
189 S L -0.8347
190 G L -1.4404
191 S L -1.8367
192 G L -2.4348
193 T L -2.6655
194 D L -3.1595
195 F L 0.0000
196 T L -0.9084
197 L L 0.0000
198 T L -0.6133
199 I L 0.0000
200 S L -1.6828
201 S L -1.2897
202 L L 0.0000
203 Q L -0.7792
204 P L -0.6494
205 E L -1.8871
206 D L 0.0000
207 F L -0.5665
208 A L 0.0000
209 T L -1.2465
210 Y L 0.0000
211 Y L 0.0000
212 C L 0.0000
213 Q L 0.0000
214 H L 0.0000
215 T L 1.2803
216 Y L 1.5418
217 I L 2.0705
218 T L 0.8666
219 P L 0.0553
220 Y L 0.0000
221 T L -0.4667
222 F L -0.4845
223 G L 0.0000
224 Q L -1.5944
225 G L 0.0000
226 T L 0.0000
227 K L -2.1440
228 V L 0.0000
229 E L -0.9099
230 I L 0.9385
231 K L -0.7859
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Laboratory of Theory of Biopolymers 2018