Project name: 2AGJ VHVL

Status: done

Started: 2026-03-30 06:37:14
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Chain sequence(s) H: QVTLKESGPTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPVDTATYYCARTSGWDIEFEYWGQGTLVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASETVSNDKVAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLSISGLEPEDFVVYYCQQYASSPRTFGQGTK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:12)
Show buried residues

Minimal score value
-2.5926
Maximal score value
1.2474
Average score
-0.5854
Total score value
-131.1243

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.3775
2 V H 0.0000
3 T H -0.9348
4 L H 0.0000
5 K H -1.7890
6 E H 0.0000
7 S H -0.7620
8 G H -0.3029
9 P H 0.1205
11 T H 0.5554
12 L H 1.0583
13 V H 0.0000
14 K H -1.2465
15 P H -1.3652
16 T H -1.6079
17 Q H -1.7597
18 T H -1.1742
19 L H 0.0000
20 T H -0.1270
21 L H 0.0000
22 T H -0.3609
23 C H 0.0000
24 T H -1.2147
25 F H 0.0000
26 S H -1.0262
27 G H -1.0646
28 F H 0.0000
29 S H -0.3670
30 L H 0.0000
31 T H -0.4266
34 T H -0.2190
35 T H -0.1086
36 G H 0.0000
37 E H 0.0000
38 G H 0.0000
39 V H 0.0000
40 G H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.7743
45 P H 0.0000
46 P H -0.7909
47 G H -1.4497
48 K H -2.2530
49 A H -1.2949
50 L H 0.0000
51 E H -0.7804
52 F H 0.0000
53 L H 0.0000
54 A H 0.0000
55 F H 0.0000
56 I H 0.0000
57 Y H -0.6320
58 W H -0.5920
59 N H -1.5328
63 D H -1.6361
64 A H -1.1186
65 K H -1.3100
66 R H -1.6182
67 Y H -0.9770
68 N H -0.8481
69 P H -1.0553
70 S H -0.6157
71 L H -0.7278
72 Q H -1.5575
74 S H -0.9484
75 R H -1.0829
76 L H 0.0000
77 T H -0.4598
78 I H 0.0000
79 T H -0.4656
80 K H -1.1781
81 D H -1.9513
82 A H -1.4809
83 S H -1.5886
84 K H -2.5458
85 K H -2.0889
86 Q H -1.7211
87 V H 0.0000
88 V H 0.0398
89 L H 0.0000
90 T H -0.0498
91 L H 0.0000
92 T H -1.1893
93 N H -2.0508
94 L H 0.0000
95 D H -1.2843
96 P H -0.1103
97 V H 1.2474
98 D H 0.0000
99 T H 0.4895
100 A H 0.0000
101 T H -0.0130
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.1598
107 T H 0.0000
108 S H -0.0283
109 G H 0.1809
110 W H 0.7079
112 D H -0.5672
113 I H 0.1425
114 E H 0.0000
115 F H 0.0000
116 E H -0.5150
117 Y H -0.3993
118 W H -0.6277
119 G H 0.0000
120 Q H -1.7491
121 G H 0.0000
122 T H -0.3194
123 L H 0.5480
124 V H 0.0000
125 T H 0.4714
126 V H 0.0000
127 S H -0.2697
128 S H -0.5257
1 E L -1.6588
2 I L 0.0000
3 V L 0.6541
4 L L 0.0000
5 T L -0.7400
6 Q L 0.0000
7 S L -0.9023
8 P L -0.5399
9 G L -0.8090
10 T L -0.3495
11 L L 0.0140
12 S L 0.0234
13 L L -0.3335
14 S L -0.9508
15 P L -1.7029
16 G L -1.9286
17 E L -2.4340
18 R L -2.5926
19 A L 0.0000
20 T L -0.6933
21 L L 0.0000
22 S L -0.9505
23 C L 0.0000
24 R L -2.3481
25 A L 0.0000
26 S L -0.9314
27 E L -1.4948
28 T L -1.3402
29 V L 0.0000
30 S L -1.2415
36 N L -1.8835
37 D L -1.7058
38 K L -1.0429
39 V L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.2217
46 P L -0.9943
47 G L -1.4144
48 Q L -2.0573
49 A L -1.3806
50 P L 0.0000
51 R L -1.5334
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L -0.3903
56 G L -0.9419
57 A L 0.0000
65 S L -0.7338
66 S L -0.6679
67 R L -1.3001
68 A L -0.7141
69 T L -0.5640
70 G L -0.8589
71 I L 0.0000
72 P L -1.3061
74 D L -2.1960
75 R L -1.6202
76 F L 0.0000
77 S L -0.9201
78 G L -0.5243
79 S L -0.7721
80 G L -1.2415
83 S L -1.4398
84 G L -1.4121
85 T L -1.7119
86 D L -2.2511
87 F L 0.0000
88 T L -0.8372
89 L L 0.0000
90 S L 0.0000
91 I L 0.0000
92 S L -1.8818
93 G L -1.8902
94 L L 0.0000
95 E L -2.2921
96 P L -1.5821
97 E L -1.8820
98 D L 0.0000
99 F L -0.2494
100 V L 0.0414
101 V L 0.2563
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0000
108 A L -0.7689
109 S L -0.6469
114 S L -0.8900
115 P L 0.0000
116 R L -0.4888
117 T L -0.1417
118 F L 0.1383
119 G L 0.0000
120 Q L -1.1411
121 G L 0.0000
122 T L 0.0000
123 K L -0.2107
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Laboratory of Theory of Biopolymers 2018