Project name: query_structure

Status: done

Started: 2026-03-16 23:26:56
Settings
Chain sequence(s) A: GLPVCGETCFGGRCNTPGCTCSYPICTRN
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:22)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:23)
Show buried residues

Minimal score value
-2.1598
Maximal score value
1.6806
Average score
-0.2849
Total score value
-8.2611

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A 0.3214
2 L A 1.1523
3 P A -0.2071
4 V A 0.2749
5 C A -0.4556
6 G A -0.2624
7 E A -0.2883
8 T A 0.3994
9 C A 0.0000
10 F A 1.6806
11 G A 0.0465
12 G A -0.3845
13 R A -1.6793
14 C A -1.2638
15 N A -1.7439
16 T A -1.3327
17 P A -0.9984
18 G A -1.4981
19 C A -1.5777
20 T A -0.8357
21 C A 0.1152
22 S A 0.8305
23 Y A 1.6802
24 P A 1.3654
25 I A 1.1590
26 C A 0.0000
27 T A -0.4501
28 R A -2.1491
29 N A -2.1598
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018