Project name: A208

Status: done

Started: 2025-06-22 09:47:30
Settings
Chain sequence(s) H: EVQLVESGGGLVKPGGSLKLSCAASGFTFGSYGMSWVRQTPNKRLEWVATISSGGSFTDYPDSVKGRFTISRDNAKNTLNLQMSSLKSEDTAMYYCARREYNFDGFAYWGQGTLVTVSA
L: DIVLTQSPASLAVSLGQRATISCRASQSVSTSSYSYMHWYQQKPGQPPKLLIKYASNLDSGVPARFSGSGSGTDFTLTINPVEAGDVATYYCQQSNEDPPTFGAGTKLELK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:31)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:32)
Show buried residues

Minimal score value
-3.167
Maximal score value
1.6609
Average score
-0.586
Total score value
-134.7893

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9548
2 V H -0.8400
3 Q H -0.7620
4 L H 0.0000
5 V H 1.1189
6 E H 0.0000
7 S H -0.2138
8 G H -0.6022
9 G H 0.1379
11 G H 0.8333
12 L H 1.3132
13 V H -0.2122
14 K H -1.7004
15 P H -1.6570
16 G H -1.4002
17 G H -1.1307
18 S H -1.1076
19 L H -1.0022
20 K H -2.1804
21 L H 0.0000
22 S H -0.5702
23 C H 0.0000
24 A H -0.1279
25 A H 0.0000
26 S H -0.8086
27 G H -1.0927
28 F H -0.4605
29 T H -0.2302
30 F H 0.0000
35 G H -1.0219
36 S H -0.1391
37 Y H 0.1000
38 G H 0.0889
39 M H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H 0.0000
45 T H -1.7713
46 P H -1.8805
47 N H -2.6794
48 K H -3.1670
49 R H -2.9010
50 L H 0.0000
51 E H -0.7969
52 W H 0.0000
53 V H 0.0000
54 A H 0.0000
55 T H -0.3763
56 I H 0.0000
57 S H 0.0471
58 S H -0.3374
59 G H -0.6333
62 G H -0.3472
63 S H 0.4382
64 F H 1.3963
65 T H 0.2327
66 D H -1.4633
67 Y H -1.6824
68 P H -2.0226
69 D H -2.5340
70 S H -1.6185
71 V H 0.0000
72 K H -2.3786
74 G H -1.6153
75 R H -1.4459
76 F H 0.0000
77 T H -1.1296
78 I H 0.0000
79 S H -0.5754
80 R H -1.4955
81 D H -2.2745
82 N H -2.1224
83 A H -1.5976
84 K H -2.5025
85 N H -1.8608
86 T H -1.2359
87 L H 0.0000
88 N H -1.0808
89 L H 0.0000
90 Q H -1.7295
91 M H 0.0000
92 S H -1.0715
93 S H -1.0965
94 L H 0.0000
95 K H -2.2400
96 S H -1.8988
97 E H -2.3365
98 D H 0.0000
99 T H -0.4385
100 A H 0.0000
101 M H 0.4702
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 R H -0.0592
108 E H 0.2200
109 Y H 0.7647
110 N H -0.2366
112 F H 0.6112
113 D H 0.0000
114 G H 0.0000
115 F H 0.0000
116 A H 0.0000
117 Y H 0.3275
118 W H -0.0547
119 G H 0.0000
120 Q H -1.0842
121 G H -0.0963
122 T H 0.5719
123 L H 1.6609
124 V H 0.0000
125 T H 0.2702
126 V H 0.0000
127 S H -0.5739
128 A H -0.3827
1 D L -1.8924
2 I L 0.0000
3 V L 0.8374
4 L L 0.0000
5 T L -0.4782
6 Q L -0.5501
7 S L -0.5748
8 P L -0.3617
9 A L -0.3357
10 S L -0.7648
11 L L -0.6434
12 A L -0.9083
13 V L 0.0000
14 S L -1.1612
15 L L -0.2105
16 G L -1.2806
17 Q L -2.4355
18 R L -2.8513
19 A L 0.0000
20 T L -0.6448
21 I L 0.0000
22 S L -0.8575
23 C L 0.0000
24 R L -2.2158
25 A L 0.0000
26 S L -0.7232
27 Q L -1.1089
28 S L -1.0205
29 V L 0.0000
30 S L -0.3024
31 T L -0.0866
34 S L -0.1791
35 S L 0.0325
36 Y L 0.7231
37 S L 0.1302
38 Y L 0.2796
39 M L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.7596
44 Q L 0.0000
45 K L -1.4434
46 P L -1.0928
47 G L -1.4902
48 Q L -2.1141
49 P L -1.3245
50 P L 0.0000
51 K L -1.0646
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 K L -0.3221
56 Y L 0.0479
57 A L 0.0000
65 S L -0.6200
66 N L -0.7616
67 L L -0.0378
68 D L -0.4017
69 S L -0.4179
70 G L -0.4413
71 V L -0.2074
72 P L -0.2347
74 A L -0.2332
75 R L -1.0187
76 F L 0.0000
77 S L -0.4700
78 G L -0.4644
79 S L -0.7352
80 G L -0.9749
83 S L -0.8369
84 G L -0.8957
85 T L -1.4852
86 D L -1.9404
87 F L 0.0000
88 T L -0.7433
89 L L 0.0000
90 T L -0.7960
91 I L 0.0000
92 N L -2.1232
93 P L -1.9374
94 V L 0.0000
95 E L -1.6967
96 A L -0.6773
97 G L -0.6406
98 D L 0.0000
99 V L -0.2310
100 A L 0.0000
101 T L -0.8956
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 S L -0.6620
108 N L -0.9824
109 E L -2.0312
114 D L -2.6881
115 P L -2.1869
116 P L 0.0000
117 T L -0.4973
118 F L 0.0000
119 G L 0.0000
120 A L -0.8296
121 G L -0.9348
122 T L 0.0000
123 K L -1.1513
124 L L 0.0000
125 E L -1.6579
126 L L -1.0633
127 K L -1.6022
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018