Project name: query_structure

Status: done

Started: 2026-03-16 23:44:55
Settings
Chain sequence(s) A: GTCRTFGCTCKPLRCKAPRMVRCGETCMG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:20)
Show buried residues

Minimal score value
-2.6965
Maximal score value
1.3495
Average score
-0.9773
Total score value
-28.3409

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.5399
2 T A -0.3307
3 C A 0.0000
4 R A -1.3415
5 T A -0.4576
6 F A 1.3495
7 G A 0.0288
8 C A -0.8296
9 T A -0.9642
10 C A -0.8509
11 K A -1.4361
12 P A -0.5703
13 L A 0.0129
14 R A -2.1727
15 C A -2.3073
16 K A -2.6965
17 A A -1.3504
18 P A -1.3804
19 R A -1.7804
20 M A -0.1417
21 V A -0.4653
22 R A -2.1495
23 C A -1.7244
24 G A -2.1592
25 E A -2.4592
26 T A -1.1117
27 C A -0.6727
28 M A 0.3119
29 G A -0.1518
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Laboratory of Theory of Biopolymers 2018