| Chain sequence(s) |
B: APTATRYQLLSRGPLEKVGQRVATATVIGAGLQAVSISVSGGVVTVTLRL
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:13)
[INFO] Main: Simulation completed successfully. (00:00:13)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | B | 0.1565 | |
| 2 | P | B | 0.3271 | |
| 3 | T | B | 0.3044 | |
| 4 | A | B | 0.5578 | |
| 5 | T | B | -0.1767 | |
| 6 | R | B | -1.5566 | |
| 7 | Y | B | -0.8142 | |
| 8 | Q | B | -1.0289 | |
| 9 | L | B | 0.3029 | |
| 10 | L | B | 0.1836 | |
| 11 | S | B | -0.8836 | |
| 12 | R | B | -2.0132 | |
| 13 | G | B | -1.1348 | |
| 14 | P | B | -0.4470 | |
| 15 | L | B | 0.5259 | |
| 16 | E | B | -1.0911 | |
| 17 | K | B | -1.3856 | |
| 18 | V | B | 0.0157 | |
| 19 | G | B | -1.0518 | |
| 20 | Q | B | -1.8000 | |
| 21 | R | B | -1.3776 | |
| 22 | V | B | 0.5907 | |
| 23 | A | B | 0.3831 | |
| 24 | T | B | -0.4309 | |
| 25 | A | B | -0.3340 | |
| 26 | T | B | -0.2343 | |
| 27 | V | B | 0.9320 | |
| 28 | I | B | 1.9892 | |
| 29 | G | B | 0.0000 | |
| 30 | A | B | 0.3344 | |
| 31 | G | B | -0.2147 | |
| 32 | L | B | 0.0510 | |
| 33 | Q | B | -1.0811 | |
| 34 | A | B | 0.2915 | |
| 35 | V | B | 0.9240 | |
| 36 | S | B | 1.2260 | |
| 37 | I | B | 2.9252 | |
| 38 | S | B | 2.2216 | |
| 39 | V | B | 2.6706 | |
| 40 | S | B | 0.9496 | |
| 41 | G | B | 0.1840 | |
| 42 | G | B | 0.6009 | |
| 43 | V | B | 2.1709 | |
| 44 | V | B | 2.5372 | |
| 45 | T | B | 1.9996 | |
| 46 | V | B | 2.2415 | |
| 47 | T | B | 0.7571 | |
| 48 | L | B | 0.1899 | |
| 49 | R | B | -1.0663 | |
| 50 | L | B | 0.5984 |