Project name: 5NHR VHVL

Status: done

Started: 2026-03-30 05:21:46
Settings
Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSSYINWVRQAPGQGLEWMGTINPVSGSTSYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGGWFDYWGQGTLVTVSS
L: QSALTQPASVSGSPGQSITISCTGTSSDVGSYNYVNWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCGTFAGGSYYGVFGGGTKLTVL
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:05)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:07)
Show buried residues

Minimal score value
-3.4964
Maximal score value
1.3345
Average score
-0.494
Total score value
-111.6467

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.6440
2 V H 0.0000
3 Q H -1.4792
4 L H 0.0000
5 V H 0.3221
6 Q H 0.0000
7 S H -0.4848
8 G H -0.4464
9 A H 0.2516
11 E H 0.0867
12 V H 1.0879
13 K H -0.8544
14 K H -2.3296
15 P H -2.6569
16 G H -2.3101
17 A H -1.7548
18 S H -1.7759
19 V H 0.0000
20 K H -1.9621
21 V H 0.0000
22 S H -0.5848
23 C H 0.0000
24 K H -0.5339
25 A H 0.0000
26 S H -0.7809
27 G H -1.1856
28 Y H -0.5150
29 T H -0.1775
30 F H 0.0000
35 T H 0.2998
36 S H 0.0886
37 S H 0.1288
38 Y H 0.2346
39 I H 0.0000
40 N H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4815
45 A H -0.8894
46 P H -0.9563
47 G H -1.2345
48 Q H -1.7213
49 G H -1.1911
50 L H 0.0000
51 E H -0.7609
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 T H 0.0000
56 I H 0.0000
57 N H -0.0779
58 P H 0.0000
59 V H 1.3345
62 S H 0.3712
63 G H -0.1908
64 S H -0.2781
65 T H -0.3584
66 S H -0.3391
67 Y H -0.6703
68 A H 0.0000
69 Q H -2.4662
70 K H -2.8361
71 F H 0.0000
72 Q H -2.2683
74 G H -1.6987
75 R H -1.6028
76 V H 0.0000
77 T H -0.7170
78 M H 0.0000
79 T H -0.4997
80 R H -0.4777
81 D H -0.3251
82 T H 0.2674
83 S H 0.3665
84 I H 1.2022
85 S H 0.1585
86 T H 0.0000
87 A H 0.0000
88 Y H -0.6762
89 M H 0.0000
90 E H -1.2225
91 L H 0.0000
92 S H -1.8296
93 R H -2.8397
94 L H 0.0000
95 R H -3.4964
96 S H -2.4112
97 D H -2.5317
98 D H 0.0000
99 T H -0.7259
100 A H 0.0000
101 V H 0.4904
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.2212
107 G H 0.0110
108 G H 0.0000
114 W H 0.4723
115 F H 0.0000
116 D H -0.2662
117 Y H -0.1399
118 W H -0.4288
119 G H 0.0000
120 Q H -1.2803
121 G H -0.4949
122 T H 0.0000
123 L H 0.8294
124 V H 0.0000
125 T H -0.0923
126 V H 0.0000
127 S H -1.2350
128 S H -1.2612
1 Q L -1.5356
2 S L -0.7763
3 A L -0.4626
4 L L 0.0000
5 T L -0.3297
6 Q L -0.5023
7 P L -0.3933
8 A L -0.4609
9 S L -0.5693
11 V L -0.1627
12 S L -0.0422
13 G L 0.0000
14 S L -0.1417
15 P L -0.7829
16 G L -1.4641
17 Q L -1.6418
18 S L -1.1691
19 I L 0.0000
20 T L -0.1458
21 I L 0.0000
22 S L -0.2764
23 C L 0.0000
24 T L -0.5485
25 G L -0.6047
26 T L -0.7129
27 S L -0.7536
28 S L -0.5433
29 D L -0.3909
30 V L 0.0000
31 G L -1.0643
35 S L -0.5812
36 Y L -0.0852
37 N L -0.8588
38 Y L 0.2442
39 V L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 H L -1.6899
46 P L -1.3290
47 G L -1.5802
48 K L -2.4376
49 A L -1.4402
50 P L 0.0000
51 K L -1.0292
52 L L 0.0000
53 M L 0.0000
54 I L 0.0000
55 Y L -0.4748
56 G L 0.0000
57 V L 0.0000
65 S L -1.3310
66 K L -2.0314
67 R L -1.9308
68 P L -1.0228
69 S L -0.9089
70 G L -0.7667
71 V L -0.7498
72 S L -0.9716
74 N L -1.6603
75 R L -1.0587
76 F L 0.0000
77 S L -1.0089
78 G L 0.0000
79 S L -0.8312
80 K L -1.0618
83 S L -0.8678
84 G L -1.1295
85 N L -1.2633
86 T L -0.8341
87 A L 0.0000
88 S L -0.3503
89 L L 0.0000
90 T L -0.2773
91 I L 0.0000
92 S L -1.1165
93 G L -1.3246
94 L L 0.0000
95 Q L -1.5921
96 A L -1.1013
97 E L -2.1322
98 D L 0.0000
99 E L -1.4170
100 A L 0.0000
101 D L -1.1263
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 G L 0.0000
106 T L 0.5972
107 F L 0.7589
108 A L 0.0000
109 G L 0.0000
110 G L -0.2672
113 S L 0.1386
114 Y L 1.0268
115 Y L 1.0408
116 G L 0.0000
117 V L 0.2107
118 F L 0.0000
119 G L 0.0000
120 G L -0.7945
121 G L -0.9133
122 T L 0.0000
123 K L -1.2647
124 L L 0.0000
125 T L -0.2797
126 V L 0.1170
127 L L 1.2523
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Laboratory of Theory of Biopolymers 2018