| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSSYINWVRQAPGQGLEWMGTINPVSGSTSYAQKFQGRVTMTRDTSISTAYMELSRLRSDDTAVYYCARGGWFDYWGQGTLVTVSS
L: QSALTQPASVSGSPGQSITISCTGTSSDVGSYNYVNWYQQHPGKAPKLMIYGVSKRPSGVSNRFSGSKSGNTASLTISGLQAEDEADYYCGTFAGGSYYGVFGGGTKLTVL input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:05)
[INFO] Main: Simulation completed successfully. (00:01:07)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.6440 | |
| 2 | V | H | 0.0000 | |
| 3 | Q | H | -1.4792 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.3221 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.4848 | |
| 8 | G | H | -0.4464 | |
| 9 | A | H | 0.2516 | |
| 11 | E | H | 0.0867 | |
| 12 | V | H | 1.0879 | |
| 13 | K | H | -0.8544 | |
| 14 | K | H | -2.3296 | |
| 15 | P | H | -2.6569 | |
| 16 | G | H | -2.3101 | |
| 17 | A | H | -1.7548 | |
| 18 | S | H | -1.7759 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.9621 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.5848 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.5339 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.7809 | |
| 27 | G | H | -1.1856 | |
| 28 | Y | H | -0.5150 | |
| 29 | T | H | -0.1775 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | 0.2998 | |
| 36 | S | H | 0.0886 | |
| 37 | S | H | 0.1288 | |
| 38 | Y | H | 0.2346 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.4815 | |
| 45 | A | H | -0.8894 | |
| 46 | P | H | -0.9563 | |
| 47 | G | H | -1.2345 | |
| 48 | Q | H | -1.7213 | |
| 49 | G | H | -1.1911 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.7609 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | T | H | 0.0000 | |
| 56 | I | H | 0.0000 | |
| 57 | N | H | -0.0779 | |
| 58 | P | H | 0.0000 | |
| 59 | V | H | 1.3345 | |
| 62 | S | H | 0.3712 | |
| 63 | G | H | -0.1908 | |
| 64 | S | H | -0.2781 | |
| 65 | T | H | -0.3584 | |
| 66 | S | H | -0.3391 | |
| 67 | Y | H | -0.6703 | |
| 68 | A | H | 0.0000 | |
| 69 | Q | H | -2.4662 | |
| 70 | K | H | -2.8361 | |
| 71 | F | H | 0.0000 | |
| 72 | Q | H | -2.2683 | |
| 74 | G | H | -1.6987 | |
| 75 | R | H | -1.6028 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.7170 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.4997 | |
| 80 | R | H | -0.4777 | |
| 81 | D | H | -0.3251 | |
| 82 | T | H | 0.2674 | |
| 83 | S | H | 0.3665 | |
| 84 | I | H | 1.2022 | |
| 85 | S | H | 0.1585 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.6762 | |
| 89 | M | H | 0.0000 | |
| 90 | E | H | -1.2225 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -1.8296 | |
| 93 | R | H | -2.8397 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.4964 | |
| 96 | S | H | -2.4112 | |
| 97 | D | H | -2.5317 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.7259 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.4904 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | -0.2212 | |
| 107 | G | H | 0.0110 | |
| 108 | G | H | 0.0000 | |
| 114 | W | H | 0.4723 | |
| 115 | F | H | 0.0000 | |
| 116 | D | H | -0.2662 | |
| 117 | Y | H | -0.1399 | |
| 118 | W | H | -0.4288 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2803 | |
| 121 | G | H | -0.4949 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.8294 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0923 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.2350 | |
| 128 | S | H | -1.2612 | |
| 1 | Q | L | -1.5356 | |
| 2 | S | L | -0.7763 | |
| 3 | A | L | -0.4626 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.3297 | |
| 6 | Q | L | -0.5023 | |
| 7 | P | L | -0.3933 | |
| 8 | A | L | -0.4609 | |
| 9 | S | L | -0.5693 | |
| 11 | V | L | -0.1627 | |
| 12 | S | L | -0.0422 | |
| 13 | G | L | 0.0000 | |
| 14 | S | L | -0.1417 | |
| 15 | P | L | -0.7829 | |
| 16 | G | L | -1.4641 | |
| 17 | Q | L | -1.6418 | |
| 18 | S | L | -1.1691 | |
| 19 | I | L | 0.0000 | |
| 20 | T | L | -0.1458 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.2764 | |
| 23 | C | L | 0.0000 | |
| 24 | T | L | -0.5485 | |
| 25 | G | L | -0.6047 | |
| 26 | T | L | -0.7129 | |
| 27 | S | L | -0.7536 | |
| 28 | S | L | -0.5433 | |
| 29 | D | L | -0.3909 | |
| 30 | V | L | 0.0000 | |
| 31 | G | L | -1.0643 | |
| 35 | S | L | -0.5812 | |
| 36 | Y | L | -0.0852 | |
| 37 | N | L | -0.8588 | |
| 38 | Y | L | 0.2442 | |
| 39 | V | L | 0.0000 | |
| 40 | N | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | H | L | -1.6899 | |
| 46 | P | L | -1.3290 | |
| 47 | G | L | -1.5802 | |
| 48 | K | L | -2.4376 | |
| 49 | A | L | -1.4402 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.0292 | |
| 52 | L | L | 0.0000 | |
| 53 | M | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.4748 | |
| 56 | G | L | 0.0000 | |
| 57 | V | L | 0.0000 | |
| 65 | S | L | -1.3310 | |
| 66 | K | L | -2.0314 | |
| 67 | R | L | -1.9308 | |
| 68 | P | L | -1.0228 | |
| 69 | S | L | -0.9089 | |
| 70 | G | L | -0.7667 | |
| 71 | V | L | -0.7498 | |
| 72 | S | L | -0.9716 | |
| 74 | N | L | -1.6603 | |
| 75 | R | L | -1.0587 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.0089 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.8312 | |
| 80 | K | L | -1.0618 | |
| 83 | S | L | -0.8678 | |
| 84 | G | L | -1.1295 | |
| 85 | N | L | -1.2633 | |
| 86 | T | L | -0.8341 | |
| 87 | A | L | 0.0000 | |
| 88 | S | L | -0.3503 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.2773 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.1165 | |
| 93 | G | L | -1.3246 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -1.5921 | |
| 96 | A | L | -1.1013 | |
| 97 | E | L | -2.1322 | |
| 98 | D | L | 0.0000 | |
| 99 | E | L | -1.4170 | |
| 100 | A | L | 0.0000 | |
| 101 | D | L | -1.1263 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | G | L | 0.0000 | |
| 106 | T | L | 0.5972 | |
| 107 | F | L | 0.7589 | |
| 108 | A | L | 0.0000 | |
| 109 | G | L | 0.0000 | |
| 110 | G | L | -0.2672 | |
| 113 | S | L | 0.1386 | |
| 114 | Y | L | 1.0268 | |
| 115 | Y | L | 1.0408 | |
| 116 | G | L | 0.0000 | |
| 117 | V | L | 0.2107 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.7945 | |
| 121 | G | L | -0.9133 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.2647 | |
| 124 | L | L | 0.0000 | |
| 125 | T | L | -0.2797 | |
| 126 | V | L | 0.1170 | |
| 127 | L | L | 1.2523 |