Project name: Lad-EAAAKEAAAK-SnapTag [mutate: VA5A]

Status: done

Started: 2025-06-30 19:42:01
Settings
Chain sequence(s) A: QVQLVQSGAEVKKPGASVKVSCKASGLTIEDYYMHWVRQAPGQGLEWMGWIDPENGDTEYGPKFQGRVTMTRDTSINTAYMELSRLRSDDTAVYYCAVHNAHYGTWFAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCEAAAKEAAAKDKDCEMKRTTLDSPLGKLELSGCEQGLHEIIFLGKGTSAADAVEVPAPAAVLGGPEPLMQATAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYSHLAALAGNPAATAAVKTALSGNPVPILIPCHRVVQGDLDVGGYEGGLAVKEWLLAHEGHRLGKPGLG
B: DVVMTQSPLSLPVTLGQPASISCRSSQSLLHSSGNTYLEWYQQRPGQSPRPLIYKISTRFSGVPDRFSGSGSGTDFTLKISRVEAEDVGVYYCFQGSHVPYTFGGGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSFNRGEC
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues VA5A
Energy difference between WT (input) and mutated protein (by FoldX) 0.84672 kcal/mol
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       FoldX:    Building mutant model                                                       (00:05:32)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:05:56)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:10:56)
[INFO]       Main:     Simulation completed successfully.                                          (00:11:05)
Show buried residues

Minimal score value
-3.7141
Maximal score value
1.3597
Average score
-0.7176
Total score value
-454.2515

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.5313
2 V A -1.0268
3 Q A -1.7043
4 L A 0.0000
5 A A -0.9856 mutated: VA5A
6 Q A 0.0000
7 S A -0.7948
8 G A -0.6711
9 A A -0.1753
10 E A -0.5244
11 V A -0.0165
12 K A -1.2977
13 K A -2.4451
14 P A -2.3770
15 G A -2.0084
16 A A -1.5219
17 S A -1.6757
18 V A 0.0000
19 K A -1.8518
20 V A 0.0000
21 S A -0.7946
22 C A 0.0000
23 K A -1.1335
24 A A 0.0000
25 S A -0.9216
26 G A -1.0226
27 L A -0.8001
28 T A -0.8022
29 I A 0.0000
30 E A -2.6275
31 D A -2.3205
32 Y A -1.1166
33 Y A -0.5350
34 M A 0.0000
35 H A 0.0000
36 W A 0.0000
37 V A 0.0000
38 R A 0.0000
39 Q A -0.5587
40 A A -0.9641
41 P A -0.9738
42 G A -1.2118
43 Q A -1.7333
44 G A -1.0854
45 L A 0.0000
46 E A -0.6412
47 W A 0.0000
48 M A 0.0000
49 G A 0.0000
50 W A 0.0000
51 I A 0.0000
52 D A -2.1706
53 P A 0.0000
54 E A -3.5101
55 N A -3.0414
56 G A -2.5332
57 D A -2.7235
58 T A -1.3443
59 E A -0.9250
60 Y A -0.7080
61 G A 0.0000
62 P A -1.6776
63 K A -2.2451
64 F A 0.0000
65 Q A -2.1309
66 G A -1.6643
67 R A -1.7345
68 V A 0.0000
69 T A -0.7795
70 M A 0.0000
71 T A -0.9771
72 R A -1.4421
73 D A -0.8911
74 T A -0.7533
75 S A 0.2430
76 I A 1.0386
77 N A -0.1850
78 T A 0.0000
79 A A 0.0000
80 Y A -0.7515
81 M A 0.0000
82 E A -1.2382
83 L A 0.0000
84 S A -1.7970
85 R A -2.7346
86 L A 0.0000
87 R A -3.3866
88 S A -2.3350
89 D A -2.5378
90 D A 0.0000
91 T A -0.8521
92 A A 0.0000
93 V A 0.3292
94 Y A 0.0000
95 Y A 0.0000
96 C A 0.0000
97 A A 0.0000
98 V A 0.0000
99 H A 0.0000
100 N A 0.0000
101 A A -0.1381
102 H A -0.5237
103 Y A 0.8503
104 G A 0.1934
105 T A 0.0000
106 W A 0.0000
107 F A 0.0000
108 A A 0.1003
109 Y A -0.0014
110 W A -0.3319
111 G A 0.0000
112 Q A -1.4985
113 G A -0.6618
114 T A 0.0000
115 L A 0.2391
116 V A 0.0000
117 T A 0.0000
118 V A 0.0000
119 S A -1.2765
120 S A -0.9181
121 A A -0.5838
122 S A -0.6484
123 T A -0.5255
124 K A -1.1175
125 G A -1.3564
126 P A 0.0000
127 S A -0.3778
128 V A 0.0000
129 F A 0.0000
130 P A -1.0457
131 L A 0.0000
132 A A -1.1960
133 P A 0.0000
134 S A -0.9168
135 S A -0.7093
136 K A -0.8873
137 S A 0.0000
138 T A -0.6583
139 S A -0.7040
140 G A -0.8090
141 G A -0.8725
142 T A -0.6123
143 A A 0.0000
144 A A 0.0000
145 L A 0.0000
146 G A 0.0000
147 C A 0.0000
148 L A 0.0000
149 V A 0.0000
150 K A 0.0000
151 D A -0.3470
152 Y A 0.0000
153 F A 0.0000
154 P A 0.0000
155 E A -0.4748
156 P A -0.8247
157 V A 0.0000
158 T A -0.7644
159 V A -0.2756
160 S A -0.4030
161 W A 0.0000
162 N A -0.6825
163 S A -0.6354
164 G A -0.4731
165 A A -0.2221
166 L A 0.0395
167 T A -0.1529
168 S A -0.1609
169 G A -0.1988
170 V A 0.1928
171 H A -0.3329
172 T A 0.0275
173 F A 0.0000
174 P A -0.3215
175 A A 0.1964
176 V A 0.5347
177 L A 1.2518
178 Q A 0.3370
179 S A -0.0258
180 S A -0.1607
181 G A 0.0708
182 L A 0.1525
183 Y A 0.4171
184 S A 0.0000
185 L A 0.0000
186 S A 0.0000
187 S A 0.0000
188 V A 0.0000
189 V A 0.0000
190 T A -0.1152
191 V A 0.0000
192 P A -0.6034
193 S A -0.5641
194 S A -0.5667
195 S A -0.5345
196 L A -0.7325
197 G A -0.9163
198 T A -0.6485
199 Q A -1.0830
200 T A -1.0009
201 Y A 0.0000
202 I A -1.0815
203 C A 0.0000
204 N A -1.4742
205 V A 0.0000
206 N A -2.2900
207 H A 0.0000
208 K A -2.8327
209 P A -1.6058
210 S A -1.8400
211 N A -2.6043
212 T A -2.1515
213 K A -2.8461
214 V A -1.6418
215 D A -2.4731
216 K A -1.9723
217 K A -2.2409
218 V A 0.0000
219 E A -2.7592
220 P A -1.7929
221 K A -2.2335
222 S A -1.5600
223 C A -0.9823
224 E A -2.4058
225 A A -2.3345
226 A A -1.9029
227 A A -2.1441
228 K A -3.2440
229 E A -3.3118
230 A A 0.0000
231 A A -2.6745
232 A A -2.8450
233 K A -3.6295
234 D A -3.3667
235 K A -3.5459
236 D A -3.7141
237 C A 0.0000
238 E A -3.1491
239 M A -2.2708
240 K A -2.5321
241 R A -2.4761
242 T A -1.2014
243 T A -0.8439
244 L A 0.0000
245 D A -1.7679
246 S A 0.0000
247 P A -0.6805
248 L A 0.0000
249 G A -1.1629
250 K A -1.6260
251 L A 0.0000
252 E A -0.7090
253 L A 0.0000
254 S A -1.2121
255 G A 0.0000
256 C A 0.0000
257 E A -3.3379
258 Q A -2.7369
259 G A 0.0000
260 L A 0.0000
261 H A -0.8407
262 E A -0.7346
263 I A 0.0000
264 I A 0.6559
265 F A 0.1675
266 L A 0.0043
267 G A -1.0546
268 K A -2.0317
269 G A -1.4506
270 T A -1.3590
271 S A -0.9866
272 A A -0.4917
273 A A -0.5271
274 D A -1.5444
275 A A -0.4044
276 V A 0.2725
277 E A -1.2813
278 V A -0.6143
279 P A -0.6314
280 A A -0.6732
281 P A -0.2491
282 A A 0.3793
283 A A 0.7058
284 V A 1.1210
285 L A 1.3597
286 G A -0.0387
287 G A -1.4026
288 P A 0.0000
289 E A -2.4733
290 P A 0.0000
291 L A 0.0000
292 M A -0.2501
293 Q A -0.2675
294 A A 0.0000
295 T A 0.0000
296 A A 0.2310
297 W A 0.0000
298 L A 0.0000
299 N A -0.5776
300 A A 0.0000
301 Y A 0.0000
302 F A 0.0000
303 H A -1.2572
304 Q A -1.8109
305 P A -1.9409
306 E A -2.6914
307 A A -2.2601
308 I A 0.0000
309 E A -2.8153
310 E A -2.6211
311 F A -0.8816
312 P A -0.3469
313 V A 0.6292
314 P A 0.0000
315 A A -0.4383
316 L A -0.0392
317 H A 0.0000
318 H A -0.5423
319 P A -1.0129
320 V A -0.2281
321 F A 0.0000
322 Q A -0.8544
323 Q A -0.9807
324 E A -1.0091
325 S A 0.0000
326 F A 0.0000
327 T A -0.5679
328 R A -0.7023
329 Q A -0.5236
330 V A 0.0000
331 L A 0.0000
332 W A -0.2030
333 K A -0.5835
334 L A 0.0000
335 L A -0.4246
336 K A -1.4773
337 V A -0.4940
338 V A 0.0000
339 K A -1.4333
340 F A -0.8827
341 G A -1.1241
342 E A -1.3133
343 V A -0.5666
344 I A 0.0000
345 S A -0.9775
346 Y A -0.8007
347 S A -0.9663
348 H A -1.0974
349 L A 0.0000
350 A A 0.0000
351 A A -0.5166
352 L A -0.1372
353 A A 0.0000
354 G A -0.5970
355 N A -0.7806
356 P A -0.6853
357 A A -0.3610
358 A A -0.4199
359 T A -0.7156
360 A A -0.4036
361 A A -0.4738
362 V A 0.0000
363 K A -1.4719
364 T A -0.8685
365 A A 0.0000
366 L A 0.0000
367 S A -1.4272
368 G A -1.0296
369 N A -0.7694
370 P A -0.3032
371 V A 0.0000
372 P A -0.3099
373 I A 0.0000
374 L A 0.0000
375 I A 0.0000
376 P A 0.0000
377 C A 0.0000
378 H A 0.0000
379 R A 0.0000
380 V A 0.0000
381 V A 0.0000
382 Q A -1.7252
383 G A -1.3045
384 D A -1.7003
385 L A -0.1581
386 D A -1.0482
387 V A -0.6749
388 G A -0.6979
389 G A -1.1767
390 Y A -1.1794
391 E A -2.0750
392 G A -1.3030
393 G A -1.0286
394 L A -0.0545
395 A A -0.1023
396 V A 0.0000
397 K A 0.0000
398 E A -1.1420
399 W A -0.4896
400 L A 0.0000
401 L A 0.0000
402 A A -1.2741
403 H A -0.6200
404 E A 0.0000
405 G A -1.3227
406 H A -1.7173
407 R A -2.5685
408 L A -1.5398
409 G A -1.6799
410 K A -1.8416
411 P A -1.0326
412 G A -0.3408
413 L A 0.8326
414 G A 0.1212
1 D B -1.3509
2 V B 0.0000
3 V B 0.6949
4 M B 0.0000
5 T B -0.4121
6 Q B 0.0000
7 S B -0.1954
8 P B 0.3705
9 L B 1.1766
10 S B 0.3298
11 L B -0.0269
12 P B -0.8382
13 V B 0.0000
14 T B -1.0629
15 L B -0.5794
16 G B -1.1675
17 Q B -1.4821
18 P B -1.7369
19 A B 0.0000
20 S B -0.8349
21 I B 0.0000
22 S B -0.9872
23 C B 0.0000
24 R B -2.3435
25 S B 0.0000
26 S B -0.9791
27 Q B -1.4976
28 S B -0.8089
29 L B 0.0000
30 L B 0.7638
31 H B -0.1287
32 S B -0.3719
33 S B -0.5393
34 G B -0.5668
35 N B -0.5460
36 T B 0.0187
37 Y B 0.0256
38 L B 0.0000
39 E B 0.0000
40 W B 0.0000
41 Y B 0.0000
42 Q B 0.0000
43 Q B 0.0000
44 R B -1.3462
45 P B -1.2430
46 G B -1.4835
47 Q B -1.8005
48 S B -1.2165
49 P B 0.0000
50 R B -1.0793
51 P B 0.0000
52 L B 0.0000
53 I B 0.0000
54 Y B -0.1907
55 K B -0.6700
56 I B -0.5700
57 S B -0.6953
58 T B -0.8474
59 R B -1.7974
60 F B 0.0000
61 S B -0.7694
62 G B -1.0206
63 V B 0.0000
64 P B -1.3909
65 D B -2.4434
66 R B -2.1251
67 F B 0.0000
68 S B -1.4734
69 G B -0.9533
70 S B -0.9014
71 G B -1.0624
72 S B -0.7639
73 G B -0.6626
74 T B -1.4769
75 D B -2.1724
76 F B 0.0000
77 T B -1.1575
78 L B 0.0000
79 K B -1.9743
80 I B 0.0000
81 S B -2.2500
82 R B -2.9013
83 V B 0.0000
84 E B -2.2595
85 A B -1.4158
86 E B -1.9312
87 D B 0.0000
88 V B -0.8837
89 G B 0.0000
90 V B 0.1403
91 Y B 0.0000
92 Y B 0.0000
93 C B 0.0000
94 F B 0.0000
95 Q B 0.0000
96 G B 0.0000
97 S B 0.0000
98 H B -0.1422
99 V B 0.4492
100 P B -0.2327
101 Y B 0.2687
102 T B 0.0769
103 F B 0.0000
104 G B 0.0000
105 G B -0.3505
106 G B -0.2054
107 T B 0.0000
108 K B -0.2013
109 V B 0.0000
110 E B -0.8271
111 I B 0.0000
112 K B -1.7171
113 R B -1.1878
114 T B -0.2354
115 V B 0.2625
116 A B -0.0642
117 A B -0.1390
118 P B 0.0000
119 S B -0.2456
120 V B 0.0000
121 F B 0.0000
122 I B 0.0000
123 F B 0.0000
124 P B -0.5265
125 P B 0.0000
126 S B -1.7723
127 D B -2.9097
128 E B -2.9030
129 Q B 0.0000
130 L B -2.2562
131 K B -2.8393
132 S B -1.7553
133 G B -1.2347
134 T B -1.0079
135 A B 0.0000
136 S B 0.0000
137 V B 0.0000
138 V B 0.0000
139 C B 0.0000
140 L B 0.0000
141 L B 0.0000
142 N B 0.0000
143 N B -1.0058
144 F B 0.0000
145 Y B 0.0000
146 P B -1.7048
147 R B -2.7144
148 E B -3.0597
149 A B -2.2475
150 K B -2.3626
151 V B -0.9539
152 Q B -0.4928
153 W B 0.0000
154 K B -0.5924
155 V B 0.0000
156 D B -1.7355
157 N B -1.5083
158 A B -0.3985
159 L B 0.5418
160 Q B -0.3368
161 S B -0.6544
162 G B -1.2342
163 N B -1.5126
164 S B -1.3723
165 Q B -1.3628
166 E B -1.6162
167 S B -0.8979
168 V B -0.8070
169 T B -1.2256
170 E B -2.3010
171 Q B -1.9544
172 D B -2.0577
173 S B -1.9223
174 K B -2.2118
175 D B -1.6818
176 S B -1.8326
177 T B 0.0000
178 Y B 0.0000
179 S B 0.0000
180 L B 0.0000
181 S B 0.0000
182 S B 0.0000
183 T B -0.6837
184 L B 0.0000
185 T B -0.6248
186 L B -0.8131
187 S B -1.0493
188 K B -2.0237
189 A B -1.8961
190 D B -2.6219
191 Y B 0.0000
192 E B -3.0972
193 K B -3.3093
194 H B -2.2934
195 K B -1.5871
196 V B -0.8667
197 Y B 0.0000
198 A B 0.0000
199 C B 0.0000
200 E B -0.3939
201 V B 0.0000
202 T B -1.1374
203 H B 0.0000
204 Q B -1.7209
205 G B -0.4178
206 L B -0.2048
207 S B -0.4335
208 S B -0.3847
209 P B -0.4872
210 V B 0.3144
211 T B -0.1338
212 K B -0.4492
213 S B -0.4924
214 F B 0.0000
215 N B 0.0000
216 R B -1.0586
217 G B -0.9377
218 E B -0.5776
219 C B -0.2479
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Laboratory of Theory of Biopolymers 2018