Project name: c39bfd72fc68e39

Status: done

Started: 2026-04-02 12:25:12
Settings
Chain sequence(s) A: RGVPHIVMVDAYKRYKGGSGGSGGSGGSGFRFDMMGDHDAEAIEGPGPGDQAIKYKETLNFPLLSGPGPGKTEISAELAADIDATFGPGPGPIKLPILMYHAIHVMAPEEEGPGPGTDGGYGHVAYVTDVAANGHIQVGPGPGQGQVDAIVSEQAKLTEENTRGPGPGCIRINYFRTDGNYDQKGPGPGAVTNGGGLRATIAKDQPVTKGSGHHHHHH
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:03:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:03:04)
Show buried residues

Minimal score value
-3.7867
Maximal score value
0.4565
Average score
-1.2033
Total score value
-262.3227

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 R A -1.8579
2 G A -1.0199
3 V A 0.1630
4 P A 0.0369
5 H A -0.0356
6 I A 0.2273
7 V A -0.0022
8 M A 0.0000
9 V A 0.0000
10 D A 0.0000
11 A A 0.0000
12 Y A -0.7971
13 K A -2.4202
14 R A -2.3362
15 Y A -1.8623
16 K A -2.6162
17 G A -2.2588
18 G A 0.0000
19 S A -1.8788
20 G A -1.3628
21 G A -1.1817
22 S A -0.9119
23 G A -1.7437
24 G A -1.3670
25 S A -1.4482
26 G A -1.6496
27 G A -1.7690
28 S A -1.3918
29 G A -1.2972
30 F A 0.0000
31 R A -1.6077
32 F A 0.0000
33 D A -1.4542
34 M A -0.3550
35 M A -0.1869
36 G A -2.0232
37 D A -2.9418
38 H A -3.4677
39 D A -3.3847
40 A A -2.5446
41 E A -3.4231
42 A A -1.6832
43 I A -0.5064
44 E A -2.1969
45 G A -1.4789
46 P A -1.2138
47 G A -1.5293
48 P A -1.8642
49 G A -1.7374
50 D A -2.4968
51 Q A -2.2908
52 A A -1.6401
53 I A -1.8498
54 K A -2.5901
55 Y A -0.8780
56 K A -1.9602
57 E A -2.6295
58 T A -1.6412
59 L A 0.0000
60 N A -1.8525
61 F A 0.0000
62 P A -1.2059
63 L A 0.0000
64 L A 0.0000
65 S A -0.8496
66 G A -1.1003
67 P A -0.7784
68 G A -1.6690
69 P A -1.2751
70 G A -1.7331
71 K A -2.6030
72 T A -1.9914
73 E A -2.1059
74 I A 0.0000
75 S A -1.0723
76 A A -1.2406
77 E A -2.6437
78 L A 0.0000
79 A A -1.5417
80 A A -2.0448
81 D A -2.8632
82 I A 0.0000
83 D A -2.5925
84 A A -1.6760
85 T A -1.4410
86 F A 0.0000
87 G A -1.2707
88 P A -1.2657
89 G A -0.9832
90 P A -0.8952
91 G A -0.7502
92 P A -0.2302
93 I A 0.4565
94 K A -0.5914
95 L A 0.0000
96 P A -0.3666
97 I A 0.0000
98 L A 0.0000
99 M A 0.0751
100 Y A 0.0000
101 H A -0.2369
102 A A 0.0000
103 I A 0.0000
104 H A -0.1002
105 V A -0.0465
106 M A -0.8238
107 A A -1.4953
108 P A -2.1021
109 E A -3.2834
110 E A -3.7273
111 E A -3.5208
112 G A -2.6637
113 P A -1.5525
114 G A -1.6714
115 P A -1.1168
116 G A -1.2538
117 T A -1.3784
118 D A -2.1827
119 G A -1.2171
120 G A -1.3212
121 Y A 0.1353
122 G A -0.8695
123 H A -0.7175
124 V A -0.4439
125 A A -0.3889
126 Y A -0.2970
127 V A 0.0000
128 T A -0.1803
129 D A -0.5315
130 V A -0.0589
131 A A -0.2925
132 A A -0.5522
133 N A -1.4564
134 G A -1.2460
135 H A -0.9665
136 I A -0.4380
137 Q A -0.5943
138 V A 0.0000
139 G A -0.3627
140 P A -0.8002
141 G A -0.9616
142 P A -0.9240
143 G A 0.0000
144 Q A -1.8235
145 G A -1.4981
146 Q A -1.1214
147 V A 0.0000
148 D A -2.4157
149 A A -1.5571
150 I A -1.5472
151 V A -1.6906
152 S A -1.8448
153 E A -2.7224
154 Q A -2.5923
155 A A 0.0000
156 K A -2.9094
157 L A 0.0000
158 T A -2.6868
159 E A -3.3125
160 E A -3.7867
161 N A -3.5190
162 T A -2.4858
163 R A -3.0759
164 G A -2.4929
165 P A -1.3245
166 G A -1.3679
167 P A -1.2716
168 G A -1.3281
169 C A -0.9339
170 I A 0.0000
171 R A 0.0000
172 I A 0.0000
173 N A 0.0000
174 Y A 0.0000
175 F A -0.2027
176 R A -0.9746
177 T A -0.8726
178 D A -1.0157
179 G A 0.0000
180 N A 0.0000
181 Y A 0.2217
182 D A -0.3647
183 Q A 0.0000
184 K A 0.0000
185 G A -0.7306
186 P A -0.5054
187 G A -0.7631
188 P A -0.6697
189 G A -1.0478
190 A A -1.0804
191 V A 0.0000
192 T A -1.7064
193 N A -2.0893
194 G A -1.5069
195 G A -1.6582
196 G A -1.7433
197 L A 0.0000
198 R A -2.6900
199 A A -0.8677
200 T A -0.2106
201 I A -0.0108
202 A A -0.6931
203 K A -1.5727
204 D A 0.0000
205 Q A -2.1769
206 P A -1.5592
207 V A -1.2894
208 T A -2.0888
209 K A -2.3370
210 G A -1.6914
211 S A -1.4404
212 G A -1.8192
213 H A -2.0590
214 H A -2.2324
215 H A -1.9824
216 H A -1.9222
217 H A -1.6721
218 H A -1.8911
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018