Project name: GGGHKGG20

Status: done

Started: 2026-02-23 06:35:41
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Chain sequence(s) A: GGGHKGG
C: GGGHKGG
B: GGGHKGG
E: GGGHKGG
D: GGGHKGG
G: GGGHKGG
F: GGGHKGG
I: GGGHKGG
H: GGGHKGG
K: GGGHKGG
J: GGGHKGG
M: GGGHKGG
L: GGGHKGG
O: GGGHKGG
N: GGGHKGG
Q: GGGHKGG
P: GGGHKGG
S: GGGHKGG
R: GGGHKGG
T: GGGHKGG
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:12)
Show buried residues

Minimal score value
-4.1917
Maximal score value
0.0
Average score
-2.377
Total score value
-332.7731

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -1.9801
2 G A -2.6855
3 G A -2.9340
4 H A -3.6893
5 K A -3.3963
6 G A -2.1194
7 G A -1.6440
1 G B -1.5601
2 G B -1.9624
3 G B -2.7354
4 H B -2.9906
5 K B -3.7516
6 G B -2.3634
7 G B -1.6502
1 G C -1.7404
2 G C -1.9161
3 G C -2.5733
4 H C -3.2101
5 K C -3.4997
6 G C -2.3777
7 G C -1.7840
1 G D -1.9423
2 G D -2.5389
3 G D -2.6960
4 H D -3.4512
5 K D -3.0844
6 G D -2.2682
7 G D -1.2307
1 G E -1.7748
2 G E -2.2250
3 G E -2.3996
4 H E -3.1036
5 K E -2.9775
6 G E -1.9277
7 G E -1.3218
1 G F -1.8203
2 G F -2.4559
3 G F -2.7769
4 H F -3.1736
5 K F -3.5404
6 G F -2.5935
7 G F -1.3092
1 G G -1.7108
2 G G -2.2477
3 G G -2.5000
4 H G -2.8909
5 K G -3.0859
6 G G -1.6426
7 G G -1.1877
1 G H -1.7866
2 G H -2.3497
3 G H -2.7380
4 H H -3.1178
5 K H -3.6931
6 G H -2.2427
7 G H -1.3271
1 G I -1.8667
2 G I -2.3680
3 G I -3.0564
4 H I -3.3976
5 K I -3.8869
6 G I -2.1419
7 G I -1.4432
1 G J 0.0000
2 G J -2.2419
3 G J -3.1658
4 H J -3.6428
5 K J -4.0430
6 G J -2.3019
7 G J -1.3523
1 G K -1.9141
2 G K -1.7028
3 G K 0.0000
4 H K -3.5661
5 K K -4.1917
6 G K -2.7609
7 G K -1.6171
1 G L -1.9009
2 G L -1.9698
3 G L -2.1320
4 H L -2.4565
5 K L -2.6605
6 G L -1.8490
7 G L -1.2542
1 G M -1.5594
2 G M -1.9857
3 G M -2.2574
4 H M -2.8548
5 K M -2.6858
6 G M -1.9289
7 G M -1.3039
1 G N -1.8121
2 G N -2.2464
3 G N -2.4368
4 H N -2.9525
5 K N -2.8789
6 G N -1.9214
7 G N -1.2928
1 G O -1.7651
2 G O -2.0538
3 G O -2.3331
4 H O -2.8077
5 K O -2.6819
6 G O -1.8787
7 G O -1.1579
1 G P -1.7473
2 G P -2.2394
3 G P -3.0823
4 H P -3.4207
5 K P -3.7346
6 G P -2.7001
7 G P -1.5195
1 G Q -2.1802
2 G Q -2.5591
3 G Q -3.0658
4 H Q -3.6055
5 K Q -3.5364
6 G Q -2.6556
7 G Q -1.6878
1 G R -1.7374
2 G R -1.8435
3 G R -2.4437
4 H R -2.8655
5 K R -3.2390
6 G R -2.3275
7 G R -1.5540
1 G S -1.9789
2 G S -2.2583
3 G S -2.7669
4 H S -3.1704
5 K S -3.0795
6 G S -2.3232
7 G S -1.4175
1 G T -1.8152
2 G T -1.9140
3 G T -2.6017
4 H T -3.0292
5 K T -3.1820
6 G T -2.6871
7 G T -1.4296
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Laboratory of Theory of Biopolymers 2018