Project name: GHKGHKS2

Status: done

Started: 2026-05-21 12:18:12
Settings
Chain sequence(s) A: GHKGHKS
B: GHKGHKS
input PDB
Selected Chain(s) A,B
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:20)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:21)
Show buried residues

Minimal score value
-4.133
Maximal score value
-1.3207
Average score
-3.0162
Total score value
-42.2274

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -4.0184
2 H A -3.8882
3 K A -4.1330
4 G A -3.1294
5 H A -2.6952
6 K A -2.6755
7 S A -1.3207
1 G B -2.0479
2 H B -3.1038
3 K B -3.9639
4 G B -3.6545
5 H B -3.2159
6 K B -3.0253
7 S B -1.3557
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Laboratory of Theory of Biopolymers 2018