Project name: FFKGHGF20

Status: done

Started: 2026-05-19 10:23:47
Settings
Chain sequence(s) A: FFKGHGF
C: FFKGHGF
B: FFKGHGF
E: FFKGHGF
D: FFKGHGF
G: FFKGHGF
F: FFKGHGF
I: FFKGHGF
H: FFKGHGF
K: FFKGHGF
J: FFKGHGF
M: FFKGHGF
L: FFKGHGF
O: FFKGHGF
N: FFKGHGF
Q: FFKGHGF
P: FFKGHGF
S: FFKGHGF
R: FFKGHGF
T: FFKGHGF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:12:06)
[INFO]       Main:     Simulation completed successfully.                                          (00:12:11)
Show buried residues

Minimal score value
-1.1978
Maximal score value
4.303
Average score
1.6065
Total score value
224.9146

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 3.0790
2 F A 2.7392
3 K A -0.1259
4 G A 0.0000
5 H A -1.1978
6 G A -0.1180
7 F A 2.5658
1 F B 4.0674
2 F B 3.3682
3 K B 1.1096
4 G B 1.2980
5 H B -0.2643
6 G B 0.0000
7 F B 2.4730
1 F C 3.5740
2 F C 3.2982
3 K C 1.8962
4 G C 0.0000
5 H C 0.4527
6 G C 1.1352
7 F C 1.9061
1 F D 2.4965
2 F D 2.1246
3 K D -0.3058
4 G D 0.2468
5 H D -0.3764
6 G D 1.0686
7 F D 2.6791
1 F E 2.5436
2 F E 2.5490
3 K E 0.0649
4 G E 0.6073
5 H E -0.5842
6 G E 0.0744
7 F E 1.6089
1 F F 2.7212
2 F F 2.9100
3 K F 0.6308
4 G F 0.0000
5 H F -0.1308
6 G F 0.8210
7 F F 1.4096
1 F G 3.4990
2 F G 3.0852
3 K G 2.4427
4 G G 0.0000
5 H G 0.9784
6 G G 0.0000
7 F G 1.9919
1 F H 2.0327
2 F H 2.2794
3 K H 0.7349
4 G H 1.0868
5 H H 1.5785
6 G H 0.9962
7 F H 2.4422
1 F I 1.7431
2 F I 2.3213
3 K I 0.8131
4 G I 0.0000
5 H I 0.1405
6 G I 0.0000
7 F I 1.8642
1 F J 2.4480
2 F J 2.8223
3 K J 1.2427
4 G J 0.0000
5 H J -0.1794
6 G J 0.1405
7 F J 1.4318
1 F K 3.0284
2 F K 3.1283
3 K K 0.4842
4 G K 1.1546
5 H K 0.0282
6 G K 0.0000
7 F K 1.8652
1 F L 3.6616
2 F L 3.5879
3 K L 2.1824
4 G L 0.0000
5 H L 1.1201
6 G L 0.7493
7 F L 1.9713
1 F M 3.5945
2 F M 2.7991
3 K M 1.1678
4 G M 0.0000
5 H M 1.6107
6 G M 1.4761
7 F M 2.7099
1 F N 2.7848
2 F N 3.0628
3 K N 0.0000
4 G N 3.1224
5 H N 2.7075
6 G N 2.3102
7 F N 3.1866
1 F O 3.0790
2 F O 4.1302
3 K O 0.0000
4 G O 3.3465
5 H O 3.0495
6 G O 1.7809
7 F O 2.9019
1 F P 4.3030
2 F P 3.8827
3 K P 3.0731
4 G P 0.0000
5 H P 2.0565
6 G P 1.9292
7 F P 2.9228
1 F Q 3.4291
2 F Q 3.7770
3 K Q 2.3697
4 G Q 0.0000
5 H Q 1.0868
6 G Q 0.9586
7 F Q 1.5884
1 F R 3.6039
2 F R 2.8574
3 K R 1.2920
4 G R 0.3594
5 H R -0.0821
6 G R 0.1503
7 F R 1.0538
1 F S 2.9117
2 F S 3.1264
3 K S 1.6158
4 G S 1.9124
5 H S 0.6681
6 G S 0.4228
7 F S 2.3396
1 F T 2.4916
2 F T 1.9443
3 K T -0.3899
4 G T 0.3193
5 H T -0.0937
6 G T 0.6150
7 F T 2.2860
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018