| Chain sequence(s) |
A: FFKGHGF
C: FFKGHGF B: FFKGHGF E: FFKGHGF D: FFKGHGF G: FFKGHGF F: FFKGHGF I: FFKGHGF H: FFKGHGF K: FFKGHGF J: FFKGHGF M: FFKGHGF L: FFKGHGF O: FFKGHGF N: FFKGHGF Q: FFKGHGF P: FFKGHGF S: FFKGHGF R: FFKGHGF T: FFKGHGF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:12:06)
[INFO] Main: Simulation completed successfully. (00:12:11)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.0790 | |
| 2 | F | A | 2.7392 | |
| 3 | K | A | -0.1259 | |
| 4 | G | A | 0.0000 | |
| 5 | H | A | -1.1978 | |
| 6 | G | A | -0.1180 | |
| 7 | F | A | 2.5658 | |
| 1 | F | B | 4.0674 | |
| 2 | F | B | 3.3682 | |
| 3 | K | B | 1.1096 | |
| 4 | G | B | 1.2980 | |
| 5 | H | B | -0.2643 | |
| 6 | G | B | 0.0000 | |
| 7 | F | B | 2.4730 | |
| 1 | F | C | 3.5740 | |
| 2 | F | C | 3.2982 | |
| 3 | K | C | 1.8962 | |
| 4 | G | C | 0.0000 | |
| 5 | H | C | 0.4527 | |
| 6 | G | C | 1.1352 | |
| 7 | F | C | 1.9061 | |
| 1 | F | D | 2.4965 | |
| 2 | F | D | 2.1246 | |
| 3 | K | D | -0.3058 | |
| 4 | G | D | 0.2468 | |
| 5 | H | D | -0.3764 | |
| 6 | G | D | 1.0686 | |
| 7 | F | D | 2.6791 | |
| 1 | F | E | 2.5436 | |
| 2 | F | E | 2.5490 | |
| 3 | K | E | 0.0649 | |
| 4 | G | E | 0.6073 | |
| 5 | H | E | -0.5842 | |
| 6 | G | E | 0.0744 | |
| 7 | F | E | 1.6089 | |
| 1 | F | F | 2.7212 | |
| 2 | F | F | 2.9100 | |
| 3 | K | F | 0.6308 | |
| 4 | G | F | 0.0000 | |
| 5 | H | F | -0.1308 | |
| 6 | G | F | 0.8210 | |
| 7 | F | F | 1.4096 | |
| 1 | F | G | 3.4990 | |
| 2 | F | G | 3.0852 | |
| 3 | K | G | 2.4427 | |
| 4 | G | G | 0.0000 | |
| 5 | H | G | 0.9784 | |
| 6 | G | G | 0.0000 | |
| 7 | F | G | 1.9919 | |
| 1 | F | H | 2.0327 | |
| 2 | F | H | 2.2794 | |
| 3 | K | H | 0.7349 | |
| 4 | G | H | 1.0868 | |
| 5 | H | H | 1.5785 | |
| 6 | G | H | 0.9962 | |
| 7 | F | H | 2.4422 | |
| 1 | F | I | 1.7431 | |
| 2 | F | I | 2.3213 | |
| 3 | K | I | 0.8131 | |
| 4 | G | I | 0.0000 | |
| 5 | H | I | 0.1405 | |
| 6 | G | I | 0.0000 | |
| 7 | F | I | 1.8642 | |
| 1 | F | J | 2.4480 | |
| 2 | F | J | 2.8223 | |
| 3 | K | J | 1.2427 | |
| 4 | G | J | 0.0000 | |
| 5 | H | J | -0.1794 | |
| 6 | G | J | 0.1405 | |
| 7 | F | J | 1.4318 | |
| 1 | F | K | 3.0284 | |
| 2 | F | K | 3.1283 | |
| 3 | K | K | 0.4842 | |
| 4 | G | K | 1.1546 | |
| 5 | H | K | 0.0282 | |
| 6 | G | K | 0.0000 | |
| 7 | F | K | 1.8652 | |
| 1 | F | L | 3.6616 | |
| 2 | F | L | 3.5879 | |
| 3 | K | L | 2.1824 | |
| 4 | G | L | 0.0000 | |
| 5 | H | L | 1.1201 | |
| 6 | G | L | 0.7493 | |
| 7 | F | L | 1.9713 | |
| 1 | F | M | 3.5945 | |
| 2 | F | M | 2.7991 | |
| 3 | K | M | 1.1678 | |
| 4 | G | M | 0.0000 | |
| 5 | H | M | 1.6107 | |
| 6 | G | M | 1.4761 | |
| 7 | F | M | 2.7099 | |
| 1 | F | N | 2.7848 | |
| 2 | F | N | 3.0628 | |
| 3 | K | N | 0.0000 | |
| 4 | G | N | 3.1224 | |
| 5 | H | N | 2.7075 | |
| 6 | G | N | 2.3102 | |
| 7 | F | N | 3.1866 | |
| 1 | F | O | 3.0790 | |
| 2 | F | O | 4.1302 | |
| 3 | K | O | 0.0000 | |
| 4 | G | O | 3.3465 | |
| 5 | H | O | 3.0495 | |
| 6 | G | O | 1.7809 | |
| 7 | F | O | 2.9019 | |
| 1 | F | P | 4.3030 | |
| 2 | F | P | 3.8827 | |
| 3 | K | P | 3.0731 | |
| 4 | G | P | 0.0000 | |
| 5 | H | P | 2.0565 | |
| 6 | G | P | 1.9292 | |
| 7 | F | P | 2.9228 | |
| 1 | F | Q | 3.4291 | |
| 2 | F | Q | 3.7770 | |
| 3 | K | Q | 2.3697 | |
| 4 | G | Q | 0.0000 | |
| 5 | H | Q | 1.0868 | |
| 6 | G | Q | 0.9586 | |
| 7 | F | Q | 1.5884 | |
| 1 | F | R | 3.6039 | |
| 2 | F | R | 2.8574 | |
| 3 | K | R | 1.2920 | |
| 4 | G | R | 0.3594 | |
| 5 | H | R | -0.0821 | |
| 6 | G | R | 0.1503 | |
| 7 | F | R | 1.0538 | |
| 1 | F | S | 2.9117 | |
| 2 | F | S | 3.1264 | |
| 3 | K | S | 1.6158 | |
| 4 | G | S | 1.9124 | |
| 5 | H | S | 0.6681 | |
| 6 | G | S | 0.4228 | |
| 7 | F | S | 2.3396 | |
| 1 | F | T | 2.4916 | |
| 2 | F | T | 1.9443 | |
| 3 | K | T | -0.3899 | |
| 4 | G | T | 0.3193 | |
| 5 | H | T | -0.0937 | |
| 6 | G | T | 0.6150 | |
| 7 | F | T | 2.2860 |