Project name: c3e81b9dfb56486

Status: done

Started: 2025-06-03 05:06:21
Settings
Chain sequence(s) H: EVQLVESGGGLVQPGGSLRLSCAASGFFITNNYWGWVRQAPGKGLEWVGYISYSGSTSYNPSLKSRFTISRDTSKNTFYLQMNSLRAEDTAVYYCARTGSSGYFDFWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASESVDDLLHWYQQKPGKAPKLLIKYASQSISGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQGNSLPNTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:27)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:28)
Show buried residues

Minimal score value
-2.7453
Maximal score value
1.5885
Average score
-0.5627
Total score value
-126.0559

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E H -1.9414
2 V H -0.8075
3 Q H -0.9911
4 L H 0.0000
5 V H 0.6703
6 E H 0.0000
7 S H -0.2662
8 G H -0.5737
9 G H 0.1138
11 G H 0.8088
12 L H 1.3646
13 V H -0.0516
14 Q H -1.3552
15 P H -1.4827
16 G H -1.4706
17 G H -1.1849
18 S H -1.0029
19 L H -0.7650
20 R H -1.5909
21 L H 0.0000
22 S H -0.3409
23 C H 0.0000
24 A H -0.1297
25 A H -0.0222
26 S H -0.3823
27 G H -0.6821
28 F H 0.3452
29 F H 1.4107
30 I H 0.0000
35 T H 0.3120
36 N H -0.2387
37 N H 0.1647
38 Y H 0.3534
39 W H 0.0000
40 G H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H -0.3872
44 Q H -0.7196
45 A H -1.1175
46 P H -1.0608
47 G H -1.4512
48 K H -2.3719
49 G H -1.6355
50 L H 0.0000
51 E H -0.9517
52 W H 0.0000
53 V H 0.0000
54 G H 0.0000
55 Y H 0.3306
56 I H 0.0000
57 S H 0.0000
58 Y H 0.9728
59 S H 0.0815
63 G H -0.0099
64 S H -0.0795
65 T H 0.0408
66 S H -0.1248
67 Y H -0.3987
68 N H -0.8375
69 P H -1.1407
70 S H -0.9000
71 L H 0.0000
72 K H -1.9883
74 S H -1.2741
75 R H -1.1248
76 F H 0.0000
77 T H -0.7192
78 I H 0.0000
79 S H -0.4132
80 R H -0.9056
81 D H -1.2486
82 T H -0.7918
83 S H -1.1050
84 K H -1.9164
85 N H -0.8681
86 T H -0.5742
87 F H 0.0000
88 Y H -0.4835
89 L H 0.0000
90 Q H -1.0229
91 M H 0.0000
92 N H -1.2394
93 S H -1.2393
94 L H 0.0000
95 R H -2.3216
96 A H -1.7068
97 E H -2.2345
98 D H 0.0000
99 T H -0.4150
100 A H 0.0000
101 V H 0.5222
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H -0.0669
107 T H 0.0000
108 G H -0.1527
109 S H -0.1428
110 S H -0.3596
113 G H -0.1240
114 Y H 0.0116
115 F H 0.0000
116 D H -0.1552
117 F H 0.3447
118 W H -0.1660
119 G H 0.0000
120 Q H -1.3257
121 G H -0.3985
122 T H 0.4529
123 L H 1.5885
124 V H 0.0000
125 T H 0.3206
126 V H 0.0000
127 S H -0.5538
128 S H -0.5484
1 D L -2.1420
2 I L 0.0000
3 Q L -2.3371
4 M L 0.0000
5 T L -1.4478
6 Q L 0.0000
7 S L -0.7475
8 P L -0.5402
9 S L -0.8907
10 S L -0.9908
11 L L -0.7405
12 S L -0.9555
13 A L -0.9604
14 S L -0.8793
15 V L -0.1459
16 G L -0.7843
17 D L -1.8973
18 R L -2.4164
19 V L 0.0000
20 T L -0.6502
21 I L 0.0000
22 T L -0.8009
23 C L 0.0000
24 R L -2.7453
25 A L 0.0000
26 S L -2.0409
27 E L -2.4106
28 S L -1.9138
29 V L 0.0000
36 D L -2.4489
37 D L -2.1680
38 L L -1.0284
39 L L 0.0000
40 H L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L -0.8602
44 Q L 0.0000
45 K L -1.7043
46 P L -1.1661
47 G L -1.6770
48 K L -2.6186
49 A L -1.5513
50 P L 0.0000
51 K L -1.3412
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 K L -0.5860
56 Y L -0.7709
57 A L 0.0000
65 S L -0.9168
66 Q L -1.1675
67 S L -0.6583
68 I L -0.4049
69 S L -0.3938
70 G L -0.4659
71 V L -0.3237
72 P L -0.3581
74 S L -0.4957
75 R L -0.7911
76 F L 0.0000
77 S L -0.5740
78 G L 0.0000
79 S L -0.8101
80 G L -1.3433
83 S L -1.7192
84 G L -1.9391
85 T L -2.0917
86 D L -2.2919
87 F L 0.0000
88 T L -0.6845
89 L L 0.0000
90 T L 0.0000
91 I L 0.0000
92 S L -1.4279
93 S L -1.2705
94 L L 0.0000
95 Q L -0.9114
96 P L -0.9745
97 E L -1.6008
98 D L 0.0000
99 F L -0.3896
100 A L 0.0000
101 T L -0.9328
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 G L -0.4668
108 N L -0.9478
109 S L -0.2544
114 L L 0.3182
115 P L 0.0000
116 N L 0.0000
117 T L -0.7521
118 F L 0.0000
119 G L 0.0000
120 Q L -1.8108
121 G L 0.0000
122 T L 0.0000
123 K L -1.6599
124 V L 0.0000
125 E L -1.0988
126 I L -0.6839
127 K L -1.5619
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Laboratory of Theory of Biopolymers 2018