Project name: c3fa54efae649da

Status: done

Started: 2024-07-26 14:53:08
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Chain sequence(s) H: VQLVESGGGLVQAGGSLRLSCAASGRTFSSYTMGWFRQAPGKEREYVGAISQNGGSTYYADSVKGRFTISRDNAKNTVYLQMNSLEPEDTAVYYCKGEPIIGSAYWGQGTQVTVS
input PDB
Selected Chain(s) H
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:01)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:01)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with H chain(s) selected             (00:00:01)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:01)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:01)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:49)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:49)
Show buried residues

Minimal score value
-3.876
Maximal score value
2.5451
Average score
-0.7523
Total score value
-86.519

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 V H 1.2553
2 Q H 0.0957
3 L H 0.0000
4 V H 0.4577
5 E H 0.0000
6 S H -0.7869
7 G H -1.2588
8 G H -0.8318
9 G H 0.1533
10 L H 1.1173
11 V H 0.0126
12 Q H -1.2917
13 A H -1.6738
14 G H -1.6062
15 G H -1.3140
16 S H -1.5900
17 L H -1.3535
18 R H -2.5145
19 L H 0.0000
20 S H -0.5258
21 C H 0.0000
22 A H -0.4461
23 A H -0.7215
24 S H -0.9951
25 G H -1.3794
26 R H -1.9254
27 T H -1.2918
28 F H 0.0000
29 S H -1.5605
30 S H -0.9657
31 Y H -0.6257
32 T H -0.9097
33 M H 0.0000
34 G H 0.0000
35 W H 0.0000
36 F H 0.1642
37 R H 0.0000
38 Q H -2.1410
39 A H -2.1958
40 P H -1.4884
41 G H -1.8196
42 K H -3.5049
43 E H -3.8760
44 R H -3.3033
45 E H -1.9597
46 Y H 0.4839
47 V H 0.0000
48 G H 0.0000
49 A H 0.3243
50 I H 0.0000
51 S H -1.1235
52 Q H -2.0920
53 N H -2.2251
54 G H -1.6611
55 G H -1.1696
56 S H -0.4099
57 T H 0.3577
58 Y H 1.0666
59 Y H -0.0159
60 A H -0.8021
61 D H -2.3140
62 S H -1.5808
63 V H 0.0000
64 K H -2.4890
65 G H -1.9516
66 R H -1.9330
67 F H 0.0000
68 T H -1.0684
69 I H 0.0000
70 S H -0.6063
71 R H -1.5534
72 D H -2.0333
73 N H -2.5041
74 A H -1.6575
75 K H -2.4893
76 N H -2.2906
77 T H 0.0000
78 V H 0.0000
79 Y H -0.4749
80 L H 0.0000
81 Q H -2.1535
82 M H 0.0000
83 N H -2.4786
84 S H -1.7179
85 L H 0.0000
86 E H -3.0115
87 P H -2.2282
88 E H -2.5551
89 D H 0.0000
90 T H -1.0243
91 A H 0.0000
92 V H -0.6092
93 Y H 0.0000
94 Y H -0.0051
95 C H 0.0000
96 K H -0.0860
97 G H -0.3867
98 E H -0.9337
99 P H 0.7151
100 I H 2.5451
101 I H 2.4891
102 G H 0.5817
103 S H 0.2318
104 A H 0.7415
105 Y H 1.4157
106 W H 1.3731
107 G H 0.0000
108 Q H -0.8419
109 G H -0.5369
110 T H -0.8563
111 Q H -1.1578
112 V H 0.0000
113 T H -0.3267
114 V H 0.0000
115 S H -0.8893
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Laboratory of Theory of Biopolymers 2018