Project name: 4EDW

Status: done

Started: 2026-03-30 05:49:09
Settings
Chain sequence(s) H: QVQLQESGPGLVKPSETLSLTCTVSGFSLIGYDLNWIRQPPGKGLEWIGIIWGDGTTDYNSAVKSRVTISKDTSKNQFSLKLSSVTAADTAVYYCARGGYWYATSYYFDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRASQSISNNLNWYQQKPGKAPKLLIYYTSRFHSGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQQEHTLPYTFGQGTKLEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:13)
Show buried residues

Minimal score value
-2.7246
Maximal score value
1.9417
Average score
-0.509
Total score value
-116.0597

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.5499
2 V H -0.9563
3 Q H -1.7090
4 L H 0.0000
5 Q H -1.5740
6 E H 0.0000
7 S H -0.7302
8 G H -0.5038
9 P H -0.1851
11 G H 0.1052
12 L H 0.4579
13 V H 0.0000
14 K H -1.5290
15 P H -1.1654
16 S H -1.1879
17 E H -1.5828
18 T H -1.2428
19 L H 0.0000
20 S H -0.9067
21 L H 0.0000
22 T H -0.6839
23 C H 0.0000
24 T H -1.1743
25 V H 0.0000
26 S H -1.1491
27 G H -1.1634
28 F H -0.2530
29 S H 0.2792
30 L H 0.0000
35 I H 1.3796
36 G H 0.5590
37 Y H 0.6692
38 D H 0.2204
39 L H 0.0000
40 N H 0.0000
41 W H 0.0000
42 I H 0.0000
43 R H 0.0000
44 Q H -0.6909
45 P H -0.7803
46 P H -0.8851
47 G H -1.4512
48 K H -2.3166
49 G H -1.5173
50 L H 0.0000
51 E H -0.9044
52 W H 0.0000
53 I H 0.0000
54 G H 0.0000
55 I H 0.0000
56 I H 0.0000
57 W H -0.3825
58 G H -0.2541
59 D H -1.4870
63 G H -1.0946
64 T H -0.8185
65 T H -0.5534
66 D H -0.4783
67 Y H -0.5053
68 N H 0.0000
69 S H -0.8931
70 A H -0.7100
71 V H 0.0000
72 K H -1.6378
74 S H -1.0889
75 R H -1.2060
76 V H 0.0000
77 T H -0.9552
78 I H 0.0000
79 S H -0.7977
80 K H -1.2085
81 D H -1.7036
82 T H -0.9984
83 S H -1.4655
84 K H -2.3158
85 N H -1.4523
86 Q H -1.5538
87 F H 0.0000
88 S H -0.7778
89 L H 0.0000
90 K H -1.5240
91 L H 0.0000
92 S H -1.0397
93 S H -0.9716
94 V H 0.0000
95 T H -0.5099
96 A H -0.1908
97 A H 0.0620
98 D H 0.0000
99 T H 0.2157
100 A H 0.0000
101 V H 0.4108
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 G H 0.0000
108 G H 0.0000
109 Y H 1.8719
110 W H 1.7877
111 Y H 1.9417
111A A H 1.0756
112A T H 0.6761
112 S H 0.0000
113 Y H 0.9623
114 Y H 0.0000
115 F H 0.0000
116 D H 0.0000
117 Y H 0.3052
118 W H -0.3799
119 G H 0.0000
120 Q H -1.8560
121 G H 0.0000
122 T H -0.1277
123 L H 0.6878
124 V H 0.0000
125 T H 0.2109
126 V H 0.0000
127 S H -0.4669
128 S H -0.6019
1 D L -2.1331
2 I L 0.0000
3 Q L -2.2346
4 M L 0.0000
5 T L -1.3947
6 Q L 0.0000
7 S L -0.6983
8 P L -0.5877
9 S L -0.9615
10 S L -1.3023
11 L L -1.0052
12 S L -1.4097
13 A L 0.0000
14 S L -0.9016
15 V L 0.1724
16 G L -0.7394
17 D L -1.9268
18 R L -2.3514
19 V L 0.0000
20 T L -0.6663
21 I L 0.0000
22 T L -0.8007
23 C L 0.0000
24 R L -2.7246
25 A L 0.0000
26 S L -1.8984
27 Q L -1.9025
28 S L -1.2928
29 I L 0.0000
36 S L -0.7692
37 N L -0.7847
38 N L 0.0000
39 L L 0.0000
40 N L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L -1.3770
45 K L -1.7669
46 P L -1.1601
47 G L -1.7057
48 K L -2.6339
49 A L -1.5960
50 P L 0.0000
51 K L -1.3217
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.0000
56 Y L -0.0347
57 T L 0.0000
65 S L -0.3560
66 R L -0.1997
67 F L 0.4448
68 H L -0.1330
69 S L -0.3011
70 G L -0.4219
71 V L -0.2432
72 P L -0.2718
74 S L -0.3065
75 R L -0.7711
76 F L 0.0000
77 S L -0.2793
78 G L -0.2744
79 S L -0.6869
80 G L -1.0648
83 S L -1.0811
84 G L -1.1844
85 T L -1.6803
86 D L -2.0800
87 F L 0.0000
88 T L -0.7184
89 F L 0.0000
90 T L -0.6038
91 I L 0.0000
92 S L -1.3417
93 S L -1.1829
94 L L 0.0000
95 Q L -0.5724
96 P L -0.9179
97 E L -1.5267
98 D L 0.0000
99 I L -0.6781
100 A L 0.0000
101 T L -1.2174
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 E L 0.0000
108 H L -0.5235
109 T L -0.3542
114 L L -0.0699
115 P L 0.0000
116 Y L 0.0000
117 T L -0.8062
118 F L 0.0000
119 G L 0.0000
120 Q L -1.6056
121 G L 0.0000
122 T L 0.0000
123 K L -2.2440
124 L L 0.0000
125 E L -2.2496
126 I L -1.0162
127 K L -1.7107
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018