Chain sequence(s) |
D: EVQLVESGGGLVQPGGSLRLSCAASDFYFDYYEMSWVRQAPGQGLEWVSTISGLGGATYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTALYYCATRSPFGDYAFSYWGQGTLVTVS
input PDB |
Selected Chain(s) | D |
Distance of aggregation | 10 Å |
FoldX usage | Yes |
Dynamic mode | No |
Automated mutations | No |
Mutated residues | LK4D |
Energy difference between WT (input) and mutated protein (by FoldX) | 1.42534 kcal/mol
CAUTION: Your mutation/s can destabilize the protein structure |
Downloads | Download all the data |
Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00) [WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow to prevent this behavior) (00:00:00) [INFO] runJob: Starting aggrescan3d job on: input.pdb with D chain(s) selected (00:00:00) [INFO] runJob: Creating pdb object from: input.pdb (00:00:00) [INFO] FoldX: Starting FoldX energy minimalization (00:00:00) [INFO] FoldX: Building mutant model (00:00:26) [INFO] FoldX: Starting FoldX energy minimalization (00:00:42) [INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:01) [INFO] Main: Simulation completed successfully. (00:01:02) |
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
residue index | residue name | chain | Aggrescan3D score | mutation |
---|---|---|---|---|
residue index | residue name | chain | Aggrescan3D score | |
1 | E | D | -1.9345 | |
2 | V | D | -1.4479 | |
3 | Q | D | -1.4763 | |
4 | K | D | -0.2498 | mutated: LK4D |
5 | V | D | 1.0435 | |
6 | E | D | 0.2086 | |
7 | S | D | -0.3644 | |
8 | G | D | -0.7494 | |
9 | G | D | -0.2008 | |
10 | G | D | 0.5545 | |
11 | L | D | 1.1623 | |
12 | V | D | 0.0000 | |
13 | Q | D | -1.4504 | |
14 | P | D | -2.0700 | |
15 | G | D | -1.8434 | |
16 | G | D | -1.3589 | |
17 | S | D | -1.3729 | |
18 | L | D | -1.2216 | |
19 | R | D | -2.0318 | |
20 | L | D | 0.0000 | |
21 | S | D | -0.4194 | |
22 | C | D | 0.0000 | |
23 | A | D | 0.1850 | |
24 | A | D | 0.0000 | |
25 | S | D | -1.0329 | |
26 | D | D | -1.7094 | |
27 | F | D | 0.0000 | |
28 | Y | D | 0.6274 | |
29 | F | D | -0.0772 | |
30 | D | D | -0.8335 | |
31 | Y | D | 0.8116 | |
32 | Y | D | 0.7812 | |
33 | E | D | 0.0000 | |
34 | M | D | 0.0000 | |
35 | S | D | 0.0000 | |
36 | W | D | 0.0000 | |
37 | V | D | 0.0000 | |
38 | R | D | -0.2574 | |
39 | Q | D | -0.5372 | |
40 | A | D | -0.9512 | |
41 | P | D | -0.8513 | |
42 | G | D | -1.2085 | |
43 | Q | D | -1.7927 | |
44 | G | D | -1.2107 | |
45 | L | D | -0.3818 | |
46 | E | D | -1.3070 | |
47 | W | D | 0.1573 | |
48 | V | D | 0.0000 | |
49 | S | D | 0.0000 | |
50 | T | D | 0.7081 | |
51 | I | D | 0.0000 | |
52 | S | D | 0.1845 | |
53 | G | D | 0.0098 | |
54 | L | D | 0.9599 | |
55 | G | D | -0.0964 | |
56 | G | D | -0.2574 | |
57 | A | D | 0.1936 | |
58 | T | D | 0.5306 | |
59 | Y | D | 1.1362 | |
60 | Y | D | 0.3039 | |
61 | A | D | -0.8315 | |
62 | D | D | -2.0784 | |
63 | S | D | -1.5229 | |
64 | V | D | -1.3884 | |
65 | K | D | -2.1034 | |
66 | G | D | -1.7736 | |
67 | R | D | -1.5465 | |
68 | F | D | 0.0000 | |
69 | T | D | -0.4636 | |
70 | I | D | 0.0734 | |
71 | S | D | -0.4952 | |
72 | R | D | -1.1584 | |
73 | D | D | -1.8570 | |
74 | N | D | -2.5682 | |
75 | S | D | -1.9168 | |
76 | K | D | -2.4055 | |
77 | N | D | -2.0097 | |
78 | T | D | -1.1519 | |
79 | L | D | 0.0000 | |
80 | Y | D | -0.3785 | |
81 | L | D | 0.0000 | |
82 | Q | D | -1.4809 | |
83 | M | D | 0.0000 | |
84 | N | D | -2.0519 | |
85 | S | D | -1.6076 | |
86 | L | D | 0.0000 | |
87 | R | D | -3.0712 | |
88 | A | D | -2.1162 | |
89 | E | D | -2.4475 | |
90 | D | D | 0.0000 | |
91 | T | D | -0.7076 | |
92 | A | D | 0.0000 | |
93 | L | D | 0.7458 | |
94 | Y | D | 0.0000 | |
95 | Y | D | 0.1851 | |
96 | C | D | 0.0000 | |
97 | A | D | 0.0000 | |
98 | T | D | 0.0000 | |
99 | R | D | 0.1256 | |
100 | S | D | 0.4252 | |
101 | P | D | 0.7482 | |
102 | F | D | 1.4823 | |
103 | G | D | -0.2314 | |
104 | D | D | -1.0653 | |
105 | Y | D | 0.5100 | |
106 | A | D | 0.0318 | |
107 | F | D | 0.0000 | |
108 | S | D | -0.1625 | |
109 | Y | D | 0.3233 | |
110 | W | D | 0.2382 | |
111 | G | D | -0.3048 | |
112 | Q | D | -1.0209 | |
113 | G | D | 0.0000 | |
114 | T | D | 0.2552 | |
115 | L | D | 1.5691 | |
116 | V | D | 0.0000 | |
117 | T | D | 0.1369 | |
118 | V | D | 0.0000 | |
119 | S | D | -1.0623 |