Project name: 7WHK_D [mutate: LK4D]

Status: done

Started: 2025-03-19 07:05:43
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Chain sequence(s) D: EVQLVESGGGLVQPGGSLRLSCAASDFYFDYYEMSWVRQAPGQGLEWVSTISGLGGATYYADSVKGRFTISRDNSKNTLYLQMNSLRAEDTALYYCATRSPFGDYAFSYWGQGTLVTVS
input PDB
Selected Chain(s) D
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues LK4D
Energy difference between WT (input) and mutated protein (by FoldX) 1.42534 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with D chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:26)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:42)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:01)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:02)
Show buried residues

Minimal score value
-3.0712
Maximal score value
1.5691
Average score
-0.4812
Total score value
-57.2676

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 E D -1.9345
2 V D -1.4479
3 Q D -1.4763
4 K D -0.2498 mutated: LK4D
5 V D 1.0435
6 E D 0.2086
7 S D -0.3644
8 G D -0.7494
9 G D -0.2008
10 G D 0.5545
11 L D 1.1623
12 V D 0.0000
13 Q D -1.4504
14 P D -2.0700
15 G D -1.8434
16 G D -1.3589
17 S D -1.3729
18 L D -1.2216
19 R D -2.0318
20 L D 0.0000
21 S D -0.4194
22 C D 0.0000
23 A D 0.1850
24 A D 0.0000
25 S D -1.0329
26 D D -1.7094
27 F D 0.0000
28 Y D 0.6274
29 F D -0.0772
30 D D -0.8335
31 Y D 0.8116
32 Y D 0.7812
33 E D 0.0000
34 M D 0.0000
35 S D 0.0000
36 W D 0.0000
37 V D 0.0000
38 R D -0.2574
39 Q D -0.5372
40 A D -0.9512
41 P D -0.8513
42 G D -1.2085
43 Q D -1.7927
44 G D -1.2107
45 L D -0.3818
46 E D -1.3070
47 W D 0.1573
48 V D 0.0000
49 S D 0.0000
50 T D 0.7081
51 I D 0.0000
52 S D 0.1845
53 G D 0.0098
54 L D 0.9599
55 G D -0.0964
56 G D -0.2574
57 A D 0.1936
58 T D 0.5306
59 Y D 1.1362
60 Y D 0.3039
61 A D -0.8315
62 D D -2.0784
63 S D -1.5229
64 V D -1.3884
65 K D -2.1034
66 G D -1.7736
67 R D -1.5465
68 F D 0.0000
69 T D -0.4636
70 I D 0.0734
71 S D -0.4952
72 R D -1.1584
73 D D -1.8570
74 N D -2.5682
75 S D -1.9168
76 K D -2.4055
77 N D -2.0097
78 T D -1.1519
79 L D 0.0000
80 Y D -0.3785
81 L D 0.0000
82 Q D -1.4809
83 M D 0.0000
84 N D -2.0519
85 S D -1.6076
86 L D 0.0000
87 R D -3.0712
88 A D -2.1162
89 E D -2.4475
90 D D 0.0000
91 T D -0.7076
92 A D 0.0000
93 L D 0.7458
94 Y D 0.0000
95 Y D 0.1851
96 C D 0.0000
97 A D 0.0000
98 T D 0.0000
99 R D 0.1256
100 S D 0.4252
101 P D 0.7482
102 F D 1.4823
103 G D -0.2314
104 D D -1.0653
105 Y D 0.5100
106 A D 0.0318
107 F D 0.0000
108 S D -0.1625
109 Y D 0.3233
110 W D 0.2382
111 G D -0.3048
112 Q D -1.0209
113 G D 0.0000
114 T D 0.2552
115 L D 1.5691
116 V D 0.0000
117 T D 0.1369
118 V D 0.0000
119 S D -1.0623
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Laboratory of Theory of Biopolymers 2018