Project name: query_structure

Status: done

Started: 2026-03-16 20:06:52
Settings
Chain sequence(s) A: GCPRPRGDNPPLTCSQDSDCLAGCVCGPNGFCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:02)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:02)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:02)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:02)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:02)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:12)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:13)
Show buried residues

Minimal score value
-3.6757
Maximal score value
1.2268
Average score
-0.8403
Total score value
-27.7313

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 G A -0.5169
2 C A -0.3042
3 P A -1.2868
4 R A -2.5377
5 P A -2.8081
6 R A -3.6757
7 G A -2.8438
8 D A -3.3784
9 N A -2.8644
10 P A -1.3260
11 P A -0.3125
12 L A 1.2206
13 T A 0.4143
14 C A -0.5355
15 S A -1.3093
16 Q A -2.1772
17 D A -2.0652
18 S A -1.4156
19 D A -1.4244
20 C A 0.1871
21 L A 1.2268
22 A A 0.4603
23 G A 0.0130
24 C A 0.4843
25 V A 0.9435
26 C A -0.2962
27 G A -0.4643
28 P A -0.8227
29 N A -1.2492
30 G A -0.4772
31 F A 0.7560
32 C A 0.5612
33 G A 0.0929
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Laboratory of Theory of Biopolymers 2018