| Chain sequence(s) |
A: QLVESGGGLVQAGDSLRLSCAASERALSSFHMGWFRQAPGKQRAFVAAIKWRDGTTYYADSVKGRFTISRDNAKNTVYLQMNSLEPEDTAVYYCYYRGRWGTYWGQGTQVTVSS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:24)
[INFO] Main: Simulation completed successfully. (00:01:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.2103 | |
| 2 | L | A | 0.0000 | |
| 3 | V | A | 0.6987 | |
| 4 | E | A | 0.0000 | |
| 5 | S | A | -0.5198 | |
| 6 | G | A | -0.9897 | |
| 7 | G | A | -0.8049 | |
| 8 | G | A | -0.0615 | |
| 9 | L | A | 1.0563 | |
| 10 | V | A | -0.1657 | |
| 11 | Q | A | -1.4867 | |
| 12 | A | A | -1.7435 | |
| 13 | G | A | -1.7255 | |
| 14 | D | A | -1.7794 | |
| 15 | S | A | -1.5815 | |
| 16 | L | A | -1.1770 | |
| 17 | R | A | -2.0961 | |
| 18 | L | A | 0.0000 | |
| 19 | S | A | -0.4471 | |
| 20 | C | A | 0.0000 | |
| 21 | A | A | -0.4722 | |
| 22 | A | A | -1.2364 | |
| 23 | S | A | -1.5934 | |
| 24 | E | A | -2.9171 | |
| 25 | R | A | -2.8555 | |
| 26 | A | A | -1.8221 | |
| 27 | L | A | 0.0000 | |
| 28 | S | A | -1.2241 | |
| 29 | S | A | -1.0881 | |
| 30 | F | A | -0.7918 | |
| 31 | H | A | -0.8927 | |
| 32 | M | A | 0.0000 | |
| 33 | G | A | 0.0000 | |
| 34 | W | A | 0.0000 | |
| 35 | F | A | 0.2413 | |
| 36 | R | A | -0.7280 | |
| 37 | Q | A | -1.5402 | |
| 38 | A | A | -1.7744 | |
| 39 | P | A | -1.3189 | |
| 40 | G | A | -1.7926 | |
| 41 | K | A | -2.8699 | |
| 42 | Q | A | -2.5331 | |
| 43 | R | A | -1.6759 | |
| 44 | A | A | -0.5833 | |
| 45 | F | A | 0.3835 | |
| 46 | V | A | 0.0000 | |
| 47 | A | A | 0.0000 | |
| 48 | A | A | 0.0000 | |
| 49 | I | A | 0.0000 | |
| 50 | K | A | -1.6062 | |
| 51 | W | A | -1.4532 | |
| 52 | R | A | -2.7698 | |
| 53 | D | A | -2.8307 | |
| 54 | G | A | -1.7240 | |
| 55 | T | A | -1.0429 | |
| 56 | T | A | -0.0409 | |
| 57 | Y | A | 0.4299 | |
| 58 | Y | A | -0.2820 | |
| 59 | A | A | -0.9063 | |
| 60 | D | A | -2.2899 | |
| 61 | S | A | -1.7397 | |
| 62 | V | A | 0.0000 | |
| 63 | K | A | -2.4984 | |
| 64 | G | A | -1.7603 | |
| 65 | R | A | -1.4673 | |
| 66 | F | A | 0.0000 | |
| 67 | T | A | -0.7378 | |
| 68 | I | A | 0.0000 | |
| 69 | S | A | -0.5861 | |
| 70 | R | A | -1.1610 | |
| 71 | D | A | -1.8374 | |
| 72 | N | A | -2.1673 | |
| 73 | A | A | -1.5903 | |
| 74 | K | A | -2.3938 | |
| 75 | N | A | -2.4244 | |
| 76 | T | A | 0.0000 | |
| 77 | V | A | 0.0000 | |
| 78 | Y | A | -0.6324 | |
| 79 | L | A | 0.0000 | |
| 80 | Q | A | -1.1987 | |
| 81 | M | A | 0.0000 | |
| 82 | N | A | -1.5906 | |
| 83 | S | A | -1.4816 | |
| 84 | L | A | 0.0000 | |
| 85 | E | A | -2.5498 | |
| 86 | P | A | -1.9263 | |
| 87 | E | A | -2.3513 | |
| 88 | D | A | 0.0000 | |
| 89 | T | A | -0.9713 | |
| 90 | A | A | 0.0000 | |
| 91 | V | A | -0.5955 | |
| 92 | Y | A | 0.0000 | |
| 93 | Y | A | 0.0174 | |
| 94 | C | A | 0.0000 | |
| 95 | Y | A | 0.0000 | |
| 96 | Y | A | -0.4463 | |
| 97 | R | A | -1.0825 | |
| 98 | G | A | -1.0047 | |
| 99 | R | A | -1.5587 | |
| 100 | W | A | 0.0564 | |
| 101 | G | A | -0.2315 | |
| 102 | T | A | -0.0700 | |
| 103 | Y | A | 0.7181 | |
| 104 | W | A | 0.6275 | |
| 105 | G | A | 0.0395 | |
| 106 | Q | A | -0.8732 | |
| 107 | G | A | 0.0000 | |
| 108 | T | A | 0.0000 | |
| 109 | Q | A | -1.0643 | |
| 110 | V | A | 0.0000 | |
| 111 | T | A | -0.3080 | |
| 112 | V | A | 0.0000 | |
| 113 | S | A | -0.8542 | |
| 114 | S | A | -0.8703 |