Project name: query_structure

Status: done

Started: 2026-03-16 20:31:57
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWDIDEQRDWFDSFLIQYQESEKVGEAIVLTVPGSERSYDLTGLKPGIEYTVSIYGVYHVYRSSNPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:03)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:04)
Show buried residues

Minimal score value
-3.6733
Maximal score value
1.7425
Average score
-0.7969
Total score value
-73.313

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.0740
2 P A -0.1567
3 A A -0.7594
4 P A 0.0000
5 K A -2.2757
6 N A -1.8986
7 L A -0.5319
8 V A 0.5525
9 V A 0.4060
10 S A -0.7464
11 R A -2.0136
12 V A -1.0149
13 T A -1.7823
14 E A -2.9989
15 D A -2.6977
16 S A -2.1056
17 A A 0.0000
18 R A -1.2970
19 L A 0.0000
20 S A -0.7308
21 W A 0.0000
22 D A -2.3679
23 I A -2.7005
24 D A -3.4111
25 E A -3.3937
26 Q A -3.3482
27 R A -3.6733
28 D A -3.4747
29 W A -1.5256
30 F A 0.0000
31 D A -1.7966
32 S A -0.9598
33 F A 0.0000
34 L A 0.7406
35 I A 0.0000
36 Q A 0.4630
37 Y A 0.3391
38 Q A -0.8157
39 E A -1.7031
40 S A -1.4571
41 E A -2.2988
42 K A -1.7845
43 V A 0.1052
44 G A -0.9287
45 E A -1.6005
46 A A -0.3505
47 I A 0.7849
48 V A 1.5964
49 L A 1.1936
50 T A 0.4702
51 V A 0.0000
52 P A -1.1086
53 G A 0.0000
54 S A -1.5953
55 E A -1.7009
56 R A -1.2636
57 S A -0.8960
58 Y A -0.7714
59 D A -1.7725
60 L A 0.0000
61 T A -1.4759
62 G A -1.4966
63 L A 0.0000
64 K A -2.9215
65 P A -2.4355
66 G A -1.6717
67 I A -1.8921
68 E A -1.7655
69 Y A 0.0000
70 T A 0.0007
71 V A 0.0000
72 S A 0.2540
73 I A 0.0000
74 Y A 0.0104
75 G A 0.0000
76 V A 0.0990
77 Y A -0.0200
78 H A -0.0704
79 V A 1.5379
80 Y A 1.1812
81 R A -0.4963
82 S A -0.2557
83 S A 0.0000
84 N A -0.9669
85 P A -0.7346
86 L A -0.5667
87 S A 0.0593
88 A A 1.0869
89 I A 1.7425
90 F A 0.0000
91 T A -0.7092
92 T A -1.8237
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Laboratory of Theory of Biopolymers 2018