Project name: 4YPG

Status: done

Started: 2026-03-30 05:21:16
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Chain sequence(s) H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYSISWVRQAPGQGLEWMGWISVYNGNTNYAQKFQGRVTMTTDTSTSTAYLELRSLRSDDTAVYYCARDPIAAGYWGQGTLVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSVSSTYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPRTFGQGTKVEIK
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:08)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:09)
Show buried residues

Minimal score value
-3.3379
Maximal score value
1.112
Average score
-0.5861
Total score value
-131.2852

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q H -1.4030
2 V H -0.7512
3 Q H -0.9866
4 L H 0.0000
5 V H 0.2704
6 Q H 0.0000
7 S H -0.4639
8 G H -0.4292
9 A H 0.3558
11 E H 0.2443
12 V H 1.1120
13 K H -0.8850
14 K H -2.1576
15 P H -2.3082
16 G H -1.6873
17 A H -1.3516
18 S H -1.4775
19 V H 0.0000
20 K H -1.8932
21 V H 0.0000
22 S H -0.4512
23 C H 0.0000
24 K H -0.7436
25 A H 0.0000
26 S H -0.7298
27 G H -0.9353
28 Y H -0.2950
29 T H -0.0370
30 F H 0.0000
35 T H 0.2421
36 S H 0.3712
37 Y H 0.6638
38 S H 0.1087
39 I H 0.0000
40 S H 0.0000
41 W H 0.0000
42 V H 0.0000
43 R H 0.0000
44 Q H -0.4720
45 A H -0.8414
46 P H -0.7109
47 G H -1.2105
48 Q H -1.8735
49 G H -1.3475
50 L H 0.0000
51 E H -0.8402
52 W H 0.0000
53 M H 0.0000
54 G H 0.0000
55 W H -0.2719
56 I H 0.0000
57 S H -0.5303
58 V H 0.0000
59 Y H 0.4224
62 N H -1.2316
63 G H -1.4043
64 N H -1.8011
65 T H -1.1749
66 N H -1.2424
67 Y H -1.1666
68 A H 0.0000
69 Q H -2.7635
70 K H -2.6655
71 F H 0.0000
72 Q H -2.4391
74 G H -1.6034
75 R H -1.5196
76 V H 0.0000
77 T H -0.7062
78 M H 0.0000
79 T H -0.4569
80 T H -0.3714
81 D H -0.6842
82 T H -0.2496
83 S H -0.4265
84 T H -0.5119
85 S H -0.5854
86 T H 0.0000
87 A H 0.0000
88 Y H -0.3212
89 L H 0.0000
90 E H -1.1164
91 L H 0.0000
92 R H -1.5289
93 S H -1.4153
94 L H 0.0000
95 R H -3.0205
96 S H -2.2887
97 D H -2.3359
98 D H 0.0000
99 T H -0.6301
100 A H 0.0000
101 V H 0.6416
102 Y H 0.0000
103 Y H 0.0000
104 C H 0.0000
105 A H 0.0000
106 R H 0.0000
107 D H 0.0000
108 P H 0.0455
109 I H 0.0000
114 A H 0.0967
115 A H 0.1993
116 G H -0.1644
117 Y H 0.0139
118 W H 0.0000
119 G H 0.0000
120 Q H -1.1454
121 G H -0.3739
122 T H 0.0000
123 L H 0.9934
124 V H 0.0000
125 T H -0.0163
126 V H 0.0000
127 S H -1.2019
128 S H -1.2556
1 E L -1.7841
2 I L 0.0000
3 V L 0.5615
4 L L 0.0000
5 T L -0.8078
6 Q L 0.0000
7 S L -0.9825
8 P L -0.6197
9 G L -1.0048
10 T L -0.7296
11 L L -0.2669
12 S L -0.3327
13 L L -0.4285
14 S L -0.9246
15 P L -1.4404
16 G L -1.8559
17 E L -2.3309
18 R L -3.0091
19 A L 0.0000
20 T L -0.6190
21 L L 0.0000
22 S L -0.9169
23 C L 0.0000
24 R L -2.3264
25 A L 0.0000
26 S L -1.0403
27 Q L -1.7436
28 S L -1.3764
29 V L 0.0000
30 S L -0.3027
36 S L -0.3019
37 T L 0.1288
38 Y L 0.5873
39 L L 0.0000
40 A L 0.0000
41 W L 0.0000
42 Y L 0.0000
43 Q L 0.0000
44 Q L 0.0000
45 K L -1.3180
46 P L -0.9398
47 G L -1.3735
48 Q L -1.9953
49 A L -1.2925
50 P L 0.0000
51 R L -1.5431
52 L L 0.0000
53 L L 0.0000
54 I L 0.0000
55 Y L 0.2371
56 G L 0.0679
57 A L 0.0000
65 S L -0.5209
66 S L -0.4768
67 R L -1.1314
68 A L -0.6265
69 T L -0.4946
70 G L -0.8543
71 I L 0.0000
72 P L -1.2798
74 D L -2.3501
75 R L -2.0243
76 F L 0.0000
77 S L -0.8706
78 G L -0.4458
79 S L -0.6474
80 G L -1.0316
83 S L -1.0202
84 G L -1.1927
85 T L -1.7273
86 D L -2.0483
87 F L 0.0000
88 T L -0.7539
89 L L 0.0000
90 T L -0.8126
91 I L 0.0000
92 S L -2.2494
93 R L -3.3379
94 L L 0.0000
95 E L -2.5305
96 P L -1.2548
97 E L -1.9865
98 D L 0.0000
99 F L -0.3533
100 A L 0.0000
101 V L -0.3450
102 Y L 0.0000
103 Y L 0.0000
104 C L 0.0000
105 Q L 0.0000
106 Q L 0.0000
107 Y L 0.0510
108 G L -0.2702
109 S L -0.6418
114 S L -0.9197
115 P L -1.0314
116 R L -0.3472
117 T L -0.2720
118 F L 0.0000
119 G L 0.0000
120 Q L -1.3619
121 G L 0.0000
122 T L 0.0000
123 K L -1.0004
124 V L 0.0000
125 E L -0.0352
126 I L 0.8887
127 K L -0.8324
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Laboratory of Theory of Biopolymers 2018