| Chain sequence(s) |
H: QVQLVQSGAEVKKPGASVKVSCKASGYTFTSYSISWVRQAPGQGLEWMGWISVYNGNTNYAQKFQGRVTMTTDTSTSTAYLELRSLRSDDTAVYYCARDPIAAGYWGQGTLVTVSS
L: EIVLTQSPGTLSLSPGERATLSCRASQSVSSTYLAWYQQKPGQAPRLLIYGASSRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQQYGSSPRTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:08)
[INFO] Main: Simulation completed successfully. (00:01:09)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.4030 | |
| 2 | V | H | -0.7512 | |
| 3 | Q | H | -0.9866 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.2704 | |
| 6 | Q | H | 0.0000 | |
| 7 | S | H | -0.4639 | |
| 8 | G | H | -0.4292 | |
| 9 | A | H | 0.3558 | |
| 11 | E | H | 0.2443 | |
| 12 | V | H | 1.1120 | |
| 13 | K | H | -0.8850 | |
| 14 | K | H | -2.1576 | |
| 15 | P | H | -2.3082 | |
| 16 | G | H | -1.6873 | |
| 17 | A | H | -1.3516 | |
| 18 | S | H | -1.4775 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.8932 | |
| 21 | V | H | 0.0000 | |
| 22 | S | H | -0.4512 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -0.7436 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -0.7298 | |
| 27 | G | H | -0.9353 | |
| 28 | Y | H | -0.2950 | |
| 29 | T | H | -0.0370 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | 0.2421 | |
| 36 | S | H | 0.3712 | |
| 37 | Y | H | 0.6638 | |
| 38 | S | H | 0.1087 | |
| 39 | I | H | 0.0000 | |
| 40 | S | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.4720 | |
| 45 | A | H | -0.8414 | |
| 46 | P | H | -0.7109 | |
| 47 | G | H | -1.2105 | |
| 48 | Q | H | -1.8735 | |
| 49 | G | H | -1.3475 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.8402 | |
| 52 | W | H | 0.0000 | |
| 53 | M | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | W | H | -0.2719 | |
| 56 | I | H | 0.0000 | |
| 57 | S | H | -0.5303 | |
| 58 | V | H | 0.0000 | |
| 59 | Y | H | 0.4224 | |
| 62 | N | H | -1.2316 | |
| 63 | G | H | -1.4043 | |
| 64 | N | H | -1.8011 | |
| 65 | T | H | -1.1749 | |
| 66 | N | H | -1.2424 | |
| 67 | Y | H | -1.1666 | |
| 68 | A | H | 0.0000 | |
| 69 | Q | H | -2.7635 | |
| 70 | K | H | -2.6655 | |
| 71 | F | H | 0.0000 | |
| 72 | Q | H | -2.4391 | |
| 74 | G | H | -1.6034 | |
| 75 | R | H | -1.5196 | |
| 76 | V | H | 0.0000 | |
| 77 | T | H | -0.7062 | |
| 78 | M | H | 0.0000 | |
| 79 | T | H | -0.4569 | |
| 80 | T | H | -0.3714 | |
| 81 | D | H | -0.6842 | |
| 82 | T | H | -0.2496 | |
| 83 | S | H | -0.4265 | |
| 84 | T | H | -0.5119 | |
| 85 | S | H | -0.5854 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3212 | |
| 89 | L | H | 0.0000 | |
| 90 | E | H | -1.1164 | |
| 91 | L | H | 0.0000 | |
| 92 | R | H | -1.5289 | |
| 93 | S | H | -1.4153 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -3.0205 | |
| 96 | S | H | -2.2887 | |
| 97 | D | H | -2.3359 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.6301 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.6416 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | D | H | 0.0000 | |
| 108 | P | H | 0.0455 | |
| 109 | I | H | 0.0000 | |
| 114 | A | H | 0.0967 | |
| 115 | A | H | 0.1993 | |
| 116 | G | H | -0.1644 | |
| 117 | Y | H | 0.0139 | |
| 118 | W | H | 0.0000 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.1454 | |
| 121 | G | H | -0.3739 | |
| 122 | T | H | 0.0000 | |
| 123 | L | H | 0.9934 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.0163 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -1.2019 | |
| 128 | S | H | -1.2556 | |
| 1 | E | L | -1.7841 | |
| 2 | I | L | 0.0000 | |
| 3 | V | L | 0.5615 | |
| 4 | L | L | 0.0000 | |
| 5 | T | L | -0.8078 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.9825 | |
| 8 | P | L | -0.6197 | |
| 9 | G | L | -1.0048 | |
| 10 | T | L | -0.7296 | |
| 11 | L | L | -0.2669 | |
| 12 | S | L | -0.3327 | |
| 13 | L | L | -0.4285 | |
| 14 | S | L | -0.9246 | |
| 15 | P | L | -1.4404 | |
| 16 | G | L | -1.8559 | |
| 17 | E | L | -2.3309 | |
| 18 | R | L | -3.0091 | |
| 19 | A | L | 0.0000 | |
| 20 | T | L | -0.6190 | |
| 21 | L | L | 0.0000 | |
| 22 | S | L | -0.9169 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.3264 | |
| 25 | A | L | 0.0000 | |
| 26 | S | L | -1.0403 | |
| 27 | Q | L | -1.7436 | |
| 28 | S | L | -1.3764 | |
| 29 | V | L | 0.0000 | |
| 30 | S | L | -0.3027 | |
| 36 | S | L | -0.3019 | |
| 37 | T | L | 0.1288 | |
| 38 | Y | L | 0.5873 | |
| 39 | L | L | 0.0000 | |
| 40 | A | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.3180 | |
| 46 | P | L | -0.9398 | |
| 47 | G | L | -1.3735 | |
| 48 | Q | L | -1.9953 | |
| 49 | A | L | -1.2925 | |
| 50 | P | L | 0.0000 | |
| 51 | R | L | -1.5431 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.2371 | |
| 56 | G | L | 0.0679 | |
| 57 | A | L | 0.0000 | |
| 65 | S | L | -0.5209 | |
| 66 | S | L | -0.4768 | |
| 67 | R | L | -1.1314 | |
| 68 | A | L | -0.6265 | |
| 69 | T | L | -0.4946 | |
| 70 | G | L | -0.8543 | |
| 71 | I | L | 0.0000 | |
| 72 | P | L | -1.2798 | |
| 74 | D | L | -2.3501 | |
| 75 | R | L | -2.0243 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.8706 | |
| 78 | G | L | -0.4458 | |
| 79 | S | L | -0.6474 | |
| 80 | G | L | -1.0316 | |
| 83 | S | L | -1.0202 | |
| 84 | G | L | -1.1927 | |
| 85 | T | L | -1.7273 | |
| 86 | D | L | -2.0483 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7539 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.8126 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.2494 | |
| 93 | R | L | -3.3379 | |
| 94 | L | L | 0.0000 | |
| 95 | E | L | -2.5305 | |
| 96 | P | L | -1.2548 | |
| 97 | E | L | -1.9865 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.3533 | |
| 100 | A | L | 0.0000 | |
| 101 | V | L | -0.3450 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | Q | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | Y | L | 0.0510 | |
| 108 | G | L | -0.2702 | |
| 109 | S | L | -0.6418 | |
| 114 | S | L | -0.9197 | |
| 115 | P | L | -1.0314 | |
| 116 | R | L | -0.3472 | |
| 117 | T | L | -0.2720 | |
| 118 | F | L | 0.0000 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.3619 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.0004 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -0.0352 | |
| 126 | I | L | 0.8887 | |
| 127 | K | L | -0.8324 |