| Chain sequence(s) |
A: MSHHHHHHSGEEEMEEDLMKKITILWNRGDTKNFLEAMRRYVELVASNSEKLSKFMIWLAETTNRSHKYYMHPSMHSGKTMERMGEIFESALSKHPAQVIAAIRNVVTESYNVNNFSWIWTISEIFWYSDSPAAAEVIMQVFKEALEKHPDDKKLIKTVKRMVRRFKNTITPDMYQEMESIIESQNS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:05:33)
[INFO] Main: Simulation completed successfully. (00:05:34)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | M | A | 0.3394 | |
| 2 | S | A | -0.8858 | |
| 3 | H | A | -1.9986 | |
| 4 | H | A | -2.5412 | |
| 5 | H | A | -2.7943 | |
| 6 | H | A | -3.1156 | |
| 7 | H | A | -3.4052 | |
| 8 | H | A | -3.5340 | |
| 9 | S | A | -3.1467 | |
| 10 | G | A | -3.2664 | |
| 11 | E | A | -3.9649 | |
| 12 | E | A | -4.4339 | |
| 13 | E | A | -4.2236 | |
| 14 | M | A | -2.7997 | |
| 15 | E | A | -3.3356 | |
| 16 | E | A | -4.3677 | |
| 17 | D | A | -4.0823 | |
| 18 | L | A | -2.3658 | |
| 19 | M | A | -1.9536 | |
| 20 | K | A | -2.5483 | |
| 21 | K | A | -1.8467 | |
| 22 | I | A | 0.0000 | |
| 23 | T | A | -0.5975 | |
| 24 | I | A | 0.3084 | |
| 25 | L | A | 0.0000 | |
| 26 | W | A | 0.0000 | |
| 27 | N | A | -1.6614 | |
| 28 | R | A | -2.1639 | |
| 29 | G | A | -1.7087 | |
| 30 | D | A | -1.7063 | |
| 31 | T | A | -1.7713 | |
| 32 | K | A | -2.1883 | |
| 33 | N | A | -1.8034 | |
| 34 | F | A | 0.0000 | |
| 35 | L | A | -1.6611 | |
| 36 | E | A | -1.8873 | |
| 37 | A | A | 0.0000 | |
| 38 | M | A | 0.0000 | |
| 39 | R | A | -2.5911 | |
| 40 | R | A | -2.4892 | |
| 41 | Y | A | 0.0000 | |
| 42 | V | A | 0.0000 | |
| 43 | E | A | -2.6441 | |
| 44 | L | A | -1.4613 | |
| 45 | V | A | 0.0000 | |
| 46 | A | A | 0.0000 | |
| 47 | S | A | -1.4695 | |
| 48 | N | A | -1.5139 | |
| 49 | S | A | -2.0028 | |
| 50 | E | A | -2.9487 | |
| 51 | K | A | -2.1907 | |
| 52 | L | A | 0.0000 | |
| 53 | S | A | 0.0000 | |
| 54 | K | A | -2.4119 | |
| 55 | F | A | 0.0000 | |
| 56 | M | A | 0.0000 | |
| 57 | I | A | -0.5174 | |
| 58 | W | A | -0.1932 | |
| 59 | L | A | 0.0000 | |
| 60 | A | A | 0.0000 | |
| 61 | E | A | -0.8224 | |
| 62 | T | A | -1.0974 | |
| 63 | T | A | 0.0000 | |
| 64 | N | A | -1.4700 | |
| 65 | R | A | -2.0222 | |
| 66 | S | A | 0.0000 | |
| 67 | H | A | -1.3241 | |
| 68 | K | A | -1.6102 | |
| 69 | Y | A | 0.5164 | |
| 70 | Y | A | 0.9609 | |
| 71 | M | A | 0.3301 | |
| 72 | H | A | -0.5404 | |
| 73 | P | A | -0.2256 | |
| 74 | S | A | -0.9006 | |
| 75 | M | A | 0.0000 | |
| 76 | H | A | -0.7880 | |
| 77 | S | A | -1.3241 | |
| 78 | G | A | -1.7411 | |
| 79 | K | A | -2.7255 | |
| 80 | T | A | 0.0000 | |
| 81 | M | A | 0.0000 | |
| 82 | E | A | -3.2680 | |
| 83 | R | A | -3.5964 | |
| 84 | M | A | 0.0000 | |
| 85 | G | A | 0.0000 | |
| 86 | E | A | -3.2314 | |
| 87 | I | A | 0.0000 | |
| 88 | F | A | 0.0000 | |
| 89 | E | A | -1.9034 | |
| 90 | S | A | -1.7399 | |
| 91 | A | A | 0.0000 | |
| 92 | L | A | 0.0000 | |
| 93 | S | A | -1.3053 | |
| 94 | K | A | -2.3813 | |
| 95 | H | A | -1.7114 | |
| 96 | P | A | -0.8949 | |
| 97 | A | A | -0.5072 | |
| 98 | Q | A | -1.1873 | |
| 99 | V | A | 0.0000 | |
| 100 | I | A | -0.1077 | |
| 101 | A | A | -0.7831 | |
| 102 | A | A | 0.0000 | |
| 103 | I | A | 0.0000 | |
| 104 | R | A | -1.2861 | |
| 105 | N | A | -1.8415 | |
| 106 | V | A | 0.0000 | |
| 107 | V | A | 0.0000 | |
| 108 | T | A | -1.3088 | |
| 109 | E | A | -1.6528 | |
| 110 | S | A | 0.0000 | |
| 111 | Y | A | -0.9689 | |
| 112 | N | A | -1.2618 | |
| 113 | V | A | -0.1518 | |
| 114 | N | A | -1.3483 | |
| 115 | N | A | -0.8105 | |
| 116 | F | A | 0.0000 | |
| 117 | S | A | -0.2619 | |
| 118 | W | A | -0.1630 | |
| 119 | I | A | 0.0000 | |
| 120 | W | A | 0.0272 | |
| 121 | T | A | 0.0000 | |
| 122 | I | A | 0.0000 | |
| 123 | S | A | 0.0000 | |
| 124 | E | A | -0.1316 | |
| 125 | I | A | 0.0000 | |
| 126 | F | A | 0.0000 | |
| 127 | W | A | -0.4885 | |
| 128 | Y | A | -1.4449 | |
| 129 | S | A | -2.0309 | |
| 130 | D | A | -2.2392 | |
| 131 | S | A | -1.4122 | |
| 132 | P | A | -1.1856 | |
| 133 | A | A | -0.9063 | |
| 134 | A | A | 0.0000 | |
| 135 | A | A | 0.0000 | |
| 136 | E | A | -1.6538 | |
| 137 | V | A | -0.8174 | |
| 138 | I | A | 0.0000 | |
| 139 | M | A | 0.0000 | |
| 140 | Q | A | -1.0703 | |
| 141 | V | A | 0.0000 | |
| 142 | F | A | 0.0000 | |
| 143 | K | A | -1.6386 | |
| 144 | E | A | -1.8298 | |
| 145 | A | A | 0.0000 | |
| 146 | L | A | 0.0000 | |
| 147 | E | A | -3.1564 | |
| 148 | K | A | -3.1332 | |
| 149 | H | A | -2.5975 | |
| 150 | P | A | -2.6505 | |
| 151 | D | A | -3.2916 | |
| 152 | D | A | -2.8799 | |
| 153 | K | A | -3.2962 | |
| 154 | K | A | -2.7152 | |
| 155 | L | A | 0.0000 | |
| 156 | I | A | 0.0000 | |
| 157 | K | A | -2.4511 | |
| 158 | T | A | -1.6424 | |
| 159 | V | A | 0.0000 | |
| 160 | K | A | -2.5809 | |
| 161 | R | A | -2.9911 | |
| 162 | M | A | 0.0000 | |
| 163 | V | A | 0.0000 | |
| 164 | R | A | -3.3409 | |
| 165 | R | A | -2.3806 | |
| 166 | F | A | 0.0000 | |
| 167 | K | A | -2.7864 | |
| 168 | N | A | -2.4153 | |
| 169 | T | A | -1.8814 | |
| 170 | I | A | 0.0000 | |
| 171 | T | A | -1.7075 | |
| 172 | P | A | -2.0105 | |
| 173 | D | A | -2.7495 | |
| 174 | M | A | -2.2557 | |
| 175 | Y | A | -2.5002 | |
| 176 | Q | A | -2.9352 | |
| 177 | E | A | -3.1540 | |
| 178 | M | A | 0.0000 | |
| 179 | E | A | -2.4359 | |
| 180 | S | A | -1.8700 | |
| 181 | I | A | -1.7452 | |
| 182 | I | A | 0.0000 | |
| 183 | E | A | -2.5244 | |
| 184 | S | A | -1.4132 | |
| 185 | Q | A | -2.1506 | |
| 186 | N | A | -2.0467 | |
| 187 | S | A | -1.1522 |