| Chain sequence(s) |
L: KSAEAYAFTYLDFDED
input PDB |
| Selected Chain(s) | L |
| Distance of aggregation | 5 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:02)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:02)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with L chain(s) selected (00:00:02)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:02)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:02)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:20)
[INFO] Main: Simulation completed successfully. (00:00:20)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 103 | K | L | -1.7375 | |
| 104 | S | L | -0.5034 | |
| 105 | A | L | -0.3086 | |
| 106 | E | L | -1.8005 | |
| 107 | A | L | -0.1743 | |
| 108 | Y | L | 0.9076 | |
| 109 | A | L | 0.3762 | |
| 110 | F | L | 1.9461 | |
| 111 | T | L | 0.5683 | |
| 112 | Y | L | 1.5405 | |
| 113 | L | L | 1.1861 | |
| 114 | D | L | -1.2033 | |
| 115 | F | L | 1.2898 | |
| 116 | D | L | -1.7582 | |
| 117 | E | L | -2.3391 | |
| 118 | D | L | -1.4512 |