Project name: query_structure

Status: done

Started: 2026-03-16 22:50:00
Settings
Chain sequence(s) A: WGVCPKVLRNCRRDSDCPGACICLGNGYCG
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:11)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:12)
Show buried residues

Minimal score value
-3.9834
Maximal score value
1.5447
Average score
-0.8684
Total score value
-26.0516

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 W A 1.3898
2 G A 0.9149
3 V A 1.5447
4 C A 0.9209
5 P A -0.1195
6 K A -1.1036
7 V A -0.3214
8 L A 0.2537
9 R A -2.1196
10 N A -2.5598
11 C A 0.0000
12 R A -3.8829
13 R A -3.9834
14 D A -2.9697
15 S A -2.6025
16 D A -3.7450
17 C A 0.0000
18 P A -0.9989
19 G A -0.3233
20 A A 0.4163
21 C A 0.0000
22 I A 0.1126
23 C A -1.4570
24 L A -0.3500
25 G A -0.9407
26 N A -1.5141
27 G A -1.6415
28 Y A -0.9596
29 C A 0.0000
30 G A -0.0120
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Laboratory of Theory of Biopolymers 2018