| Chain sequence(s) |
A: QVQLVESGGGLVQAGGSLRLSCAASGFPVQSRSMYWYRQAPGKEREWVAAIFSIGTTTEYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGMWWWAYDYWGQGTQVTVS
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:39)
[INFO] Main: Simulation completed successfully. (00:01:40)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | A | -1.4337 | |
| 2 | V | A | -0.7540 | |
| 3 | Q | A | -0.7294 | |
| 4 | L | A | 0.0000 | |
| 5 | V | A | 1.2926 | |
| 6 | E | A | 0.0000 | |
| 7 | S | A | -0.5596 | |
| 8 | G | A | -1.2065 | |
| 9 | G | A | -0.8485 | |
| 10 | G | A | -0.0777 | |
| 11 | L | A | 1.0516 | |
| 12 | V | A | 0.0051 | |
| 13 | Q | A | -1.2410 | |
| 14 | A | A | -1.4548 | |
| 15 | G | A | -1.3725 | |
| 16 | G | A | -0.9117 | |
| 17 | S | A | -1.2351 | |
| 18 | L | A | -0.9241 | |
| 19 | R | A | -2.1424 | |
| 20 | L | A | 0.0000 | |
| 21 | S | A | -0.3613 | |
| 22 | C | A | 0.0000 | |
| 23 | A | A | 0.0132 | |
| 24 | A | A | 0.0000 | |
| 25 | S | A | -0.5940 | |
| 26 | G | A | -1.0120 | |
| 27 | F | A | 0.0000 | |
| 28 | P | A | -1.2273 | |
| 29 | V | A | 0.0000 | |
| 30 | Q | A | -1.0847 | |
| 31 | S | A | -0.4755 | |
| 32 | R | A | -0.1938 | |
| 33 | S | A | 0.1637 | |
| 34 | M | A | 0.0000 | |
| 35 | Y | A | 0.0000 | |
| 36 | W | A | 0.0000 | |
| 37 | Y | A | -0.4580 | |
| 38 | R | A | -1.3153 | |
| 39 | Q | A | -2.1713 | |
| 40 | A | A | -2.0820 | |
| 41 | P | A | -1.4686 | |
| 42 | G | A | -1.9808 | |
| 43 | K | A | -3.3913 | |
| 44 | E | A | -3.6199 | |
| 45 | R | A | -2.8926 | |
| 46 | E | A | -1.8322 | |
| 47 | W | A | -0.6537 | |
| 48 | V | A | 0.0000 | |
| 49 | A | A | 0.0000 | |
| 50 | A | A | 0.0000 | |
| 51 | I | A | 0.0000 | |
| 52 | F | A | 0.5532 | |
| 53 | S | A | 0.6700 | |
| 54 | I | A | 1.4051 | |
| 55 | G | A | 0.3314 | |
| 56 | T | A | 0.5564 | |
| 57 | T | A | 0.0724 | |
| 58 | T | A | -0.5586 | |
| 59 | E | A | -1.5050 | |
| 60 | Y | A | -1.4759 | |
| 61 | A | A | 0.0000 | |
| 62 | D | A | -2.5640 | |
| 63 | S | A | -1.7271 | |
| 64 | V | A | 0.0000 | |
| 65 | K | A | -2.7972 | |
| 66 | G | A | -1.8065 | |
| 67 | R | A | -1.5373 | |
| 68 | F | A | 0.0000 | |
| 69 | T | A | -1.0215 | |
| 70 | I | A | 0.0000 | |
| 71 | S | A | -0.5546 | |
| 72 | R | A | -1.1646 | |
| 73 | D | A | -2.0937 | |
| 74 | N | A | -2.4050 | |
| 75 | A | A | -1.8447 | |
| 76 | K | A | -2.4551 | |
| 77 | N | A | -2.0193 | |
| 78 | T | A | 0.0000 | |
| 79 | V | A | 0.0000 | |
| 80 | Y | A | -0.6714 | |
| 81 | L | A | 0.0000 | |
| 82 | Q | A | -1.2404 | |
| 83 | M | A | 0.0000 | |
| 84 | N | A | -1.5051 | |
| 85 | S | A | -1.2835 | |
| 86 | L | A | 0.0000 | |
| 87 | K | A | -2.4202 | |
| 88 | P | A | -1.9513 | |
| 89 | E | A | -2.3704 | |
| 90 | D | A | 0.0000 | |
| 91 | T | A | -1.0053 | |
| 92 | A | A | 0.0000 | |
| 93 | V | A | -0.7333 | |
| 94 | Y | A | 0.0000 | |
| 95 | Y | A | -0.1981 | |
| 96 | C | A | 0.0000 | |
| 97 | N | A | 0.0000 | |
| 98 | V | A | 0.0000 | |
| 99 | K | A | -0.1985 | |
| 100 | D | A | 0.3997 | |
| 101 | Y | A | 1.8729 | |
| 102 | G | A | 1.7350 | |
| 103 | M | A | 2.2055 | |
| 104 | W | A | 2.7250 | |
| 105 | W | A | 2.8581 | |
| 106 | W | A | 2.4666 | |
| 107 | A | A | 1.5236 | |
| 108 | Y | A | 0.8652 | |
| 109 | D | A | -0.4035 | |
| 110 | Y | A | -0.0337 | |
| 111 | W | A | 0.2328 | |
| 112 | G | A | 0.0851 | |
| 113 | Q | A | -0.9223 | |
| 114 | G | A | -0.5020 | |
| 115 | T | A | 0.0000 | |
| 116 | Q | A | -1.2318 | |
| 117 | V | A | 0.0000 | |
| 118 | T | A | -0.3273 | |
| 119 | V | A | 0.0000 | |
| 120 | S | A | -0.7602 |