Project name: query_structure

Status: done

Started: 2026-03-17 00:44:51
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Chain sequence(s) A: QVQLVESGGGLVQAGGSLRLSCAASGFPVQSRSMYWYRQAPGKEREWVAAIFSIGTTTEYADSVKGRFTISRDNAKNTVYLQMNSLKPEDTAVYYCNVKDYGMWWWAYDYWGQGTQVTVS
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:39)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:40)
Show buried residues

Minimal score value
-3.6199
Maximal score value
2.8581
Average score
-0.5326
Total score value
-63.9095

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q A -1.4337
2 V A -0.7540
3 Q A -0.7294
4 L A 0.0000
5 V A 1.2926
6 E A 0.0000
7 S A -0.5596
8 G A -1.2065
9 G A -0.8485
10 G A -0.0777
11 L A 1.0516
12 V A 0.0051
13 Q A -1.2410
14 A A -1.4548
15 G A -1.3725
16 G A -0.9117
17 S A -1.2351
18 L A -0.9241
19 R A -2.1424
20 L A 0.0000
21 S A -0.3613
22 C A 0.0000
23 A A 0.0132
24 A A 0.0000
25 S A -0.5940
26 G A -1.0120
27 F A 0.0000
28 P A -1.2273
29 V A 0.0000
30 Q A -1.0847
31 S A -0.4755
32 R A -0.1938
33 S A 0.1637
34 M A 0.0000
35 Y A 0.0000
36 W A 0.0000
37 Y A -0.4580
38 R A -1.3153
39 Q A -2.1713
40 A A -2.0820
41 P A -1.4686
42 G A -1.9808
43 K A -3.3913
44 E A -3.6199
45 R A -2.8926
46 E A -1.8322
47 W A -0.6537
48 V A 0.0000
49 A A 0.0000
50 A A 0.0000
51 I A 0.0000
52 F A 0.5532
53 S A 0.6700
54 I A 1.4051
55 G A 0.3314
56 T A 0.5564
57 T A 0.0724
58 T A -0.5586
59 E A -1.5050
60 Y A -1.4759
61 A A 0.0000
62 D A -2.5640
63 S A -1.7271
64 V A 0.0000
65 K A -2.7972
66 G A -1.8065
67 R A -1.5373
68 F A 0.0000
69 T A -1.0215
70 I A 0.0000
71 S A -0.5546
72 R A -1.1646
73 D A -2.0937
74 N A -2.4050
75 A A -1.8447
76 K A -2.4551
77 N A -2.0193
78 T A 0.0000
79 V A 0.0000
80 Y A -0.6714
81 L A 0.0000
82 Q A -1.2404
83 M A 0.0000
84 N A -1.5051
85 S A -1.2835
86 L A 0.0000
87 K A -2.4202
88 P A -1.9513
89 E A -2.3704
90 D A 0.0000
91 T A -1.0053
92 A A 0.0000
93 V A -0.7333
94 Y A 0.0000
95 Y A -0.1981
96 C A 0.0000
97 N A 0.0000
98 V A 0.0000
99 K A -0.1985
100 D A 0.3997
101 Y A 1.8729
102 G A 1.7350
103 M A 2.2055
104 W A 2.7250
105 W A 2.8581
106 W A 2.4666
107 A A 1.5236
108 Y A 0.8652
109 D A -0.4035
110 Y A -0.0337
111 W A 0.2328
112 G A 0.0851
113 Q A -0.9223
114 G A -0.5020
115 T A 0.0000
116 Q A -1.2318
117 V A 0.0000
118 T A -0.3273
119 V A 0.0000
120 S A -0.7602
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Laboratory of Theory of Biopolymers 2018