| Chain sequence(s) |
A: VLRGGSGGSGGSVLKGGSGGSGGSVLRGGSGGSGGSVLKGGSGGSGGSVLRGGSGGSGGSVLKGGSGGSGGSVLR
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:38)
[INFO] Main: Simulation completed successfully. (00:00:39)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | V | A | 1.4842 | |
| 2 | L | A | 1.2061 | |
| 3 | R | A | -1.5144 | |
| 4 | G | A | -1.1937 | |
| 5 | G | A | -0.7796 | |
| 6 | S | A | -0.6577 | |
| 7 | G | A | 0.0000 | |
| 8 | G | A | -0.8385 | |
| 9 | S | A | -1.0782 | |
| 10 | G | A | -1.1180 | |
| 11 | G | A | -0.5944 | |
| 12 | S | A | 0.0802 | |
| 13 | V | A | 0.0000 | |
| 14 | L | A | -0.0219 | |
| 15 | K | A | -2.2196 | |
| 16 | G | A | -1.6648 | |
| 17 | G | A | -1.0952 | |
| 18 | S | A | -0.7022 | |
| 19 | G | A | 0.0000 | |
| 20 | G | A | -1.0023 | |
| 21 | S | A | -1.1214 | |
| 22 | G | A | -1.2836 | |
| 23 | G | A | 0.0000 | |
| 24 | S | A | -0.4790 | |
| 25 | V | A | 0.0000 | |
| 26 | L | A | -0.4937 | |
| 27 | R | A | -2.8438 | |
| 28 | G | A | -1.8563 | |
| 29 | G | A | -1.2955 | |
| 30 | S | A | -0.6672 | |
| 31 | G | A | 0.0000 | |
| 32 | G | A | -0.9347 | |
| 33 | S | A | -1.0497 | |
| 34 | G | A | -1.2698 | |
| 35 | G | A | 0.0000 | |
| 36 | S | A | -0.3187 | |
| 37 | V | A | 0.0000 | |
| 38 | L | A | -0.2473 | |
| 39 | K | A | -2.3909 | |
| 40 | G | A | -1.6978 | |
| 41 | G | A | -1.1643 | |
| 42 | S | A | -0.6491 | |
| 43 | G | A | 0.0000 | |
| 44 | G | A | -0.8984 | |
| 45 | S | A | -1.0837 | |
| 46 | G | A | -1.3011 | |
| 47 | G | A | 0.0000 | |
| 48 | S | A | -0.2608 | |
| 49 | V | A | 0.0000 | |
| 50 | L | A | 0.2420 | |
| 51 | R | A | -2.2545 | |
| 52 | G | A | -1.5146 | |
| 53 | G | A | -1.1268 | |
| 54 | S | A | -0.6812 | |
| 55 | G | A | 0.0000 | |
| 56 | G | A | -1.0232 | |
| 57 | S | A | -1.0960 | |
| 58 | G | A | -1.3437 | |
| 59 | G | A | 0.0000 | |
| 60 | S | A | -0.1593 | |
| 61 | V | A | 0.0000 | |
| 62 | L | A | 0.3508 | |
| 63 | K | A | -1.6846 | |
| 64 | G | A | -1.3036 | |
| 65 | G | A | -1.0204 | |
| 66 | S | A | -0.5044 | |
| 67 | G | A | -0.5322 | |
| 68 | G | A | -0.9581 | |
| 69 | S | A | -0.9089 | |
| 70 | G | A | -1.1085 | |
| 71 | G | A | -1.0183 | |
| 72 | S | A | -0.1704 | |
| 73 | V | A | 0.4805 | |
| 74 | L | A | 0.8144 | |
| 75 | R | A | -1.4791 |