| Chain sequence(s) |
B: APPMPKRKLIEEMRKGFEKMKEVIKEMGFEEEAEELYKKLMEKLEKMEAL
input PDB |
| Selected Chain(s) | B |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with B chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:36)
[INFO] Main: Simulation completed successfully. (00:02:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | A | B | -0.0462 | |
| 2 | P | B | -0.2469 | |
| 3 | P | B | -0.2133 | |
| 4 | M | B | -0.4917 | |
| 5 | P | B | -1.4374 | |
| 6 | K | B | -2.5259 | |
| 7 | R | B | -3.6658 | |
| 8 | K | B | -3.5441 | |
| 9 | L | B | -2.5551 | |
| 10 | I | B | 0.0000 | |
| 11 | E | B | -4.5526 | |
| 12 | E | B | -4.3749 | |
| 13 | M | B | -3.1736 | |
| 14 | R | B | -4.1453 | |
| 15 | K | B | -4.4023 | |
| 16 | G | B | -3.1216 | |
| 17 | F | B | -2.6754 | |
| 18 | E | B | -3.5450 | |
| 19 | K | B | -3.3377 | |
| 20 | M | B | -1.8543 | |
| 21 | K | B | -3.1610 | |
| 22 | E | B | -3.0220 | |
| 23 | V | B | -1.1726 | |
| 24 | I | B | -1.5215 | |
| 25 | K | B | -2.8294 | |
| 26 | E | B | -1.9696 | |
| 27 | M | B | -0.1569 | |
| 28 | G | B | -0.8958 | |
| 29 | F | B | -1.2367 | |
| 30 | E | B | -3.3718 | |
| 31 | E | B | -3.8714 | |
| 32 | E | B | -3.8042 | |
| 33 | A | B | 0.0000 | |
| 34 | E | B | -4.1786 | |
| 35 | E | B | -4.3173 | |
| 36 | L | B | -2.7431 | |
| 37 | Y | B | -3.3907 | |
| 38 | K | B | -3.8474 | |
| 39 | K | B | -3.7048 | |
| 40 | L | B | -2.8692 | |
| 41 | M | B | -3.2284 | |
| 42 | E | B | -4.1419 | |
| 43 | K | B | -3.6653 | |
| 44 | L | B | 0.0000 | |
| 45 | E | B | -3.7237 | |
| 46 | K | B | -3.0168 | |
| 47 | M | B | -1.5897 | |
| 48 | E | B | -2.4609 | |
| 49 | A | B | -0.8810 | |
| 50 | L | B | 0.6864 |