Project name: c6068d0fe3135f1

Status: done

Started: 2024-06-11 14:46:28
Settings
Chain sequence(s) H: EVQLVESGAEVKKPGSSSVKVSCRASGTFYKYAINWVRQAPGQGLEWMMGGIIPFFGTTNYAQKFQGRLTITADGSTNTAYMMQLDSLRSEDTAVYYCAGPSITESHYCLDCAAKDYYYGLDVWGQGTTVTVSSSASTKGPSVFPLAPSGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSSLSSVVTVPSSSLGTQTYICNVNHKPSNTTKVDKKVEPKSCHHHHHH
L: QSVLTQPPSASGTPGQSVTISCSSGSRSNIGGNTVNWYQHLPGMAPKLLIYSSSNQRRSSSGVVPDDRFSSGSKSGTSSASSLAISGLQSEDDDADYYCASSWDDSLNGVVFGGGTKLTVLGQPKAAPSSVTLFPPSSEELQANKATLVCLISSDFYPGAVTVAWKADSSPVKAGVETTTPSSKQSNNKYAASSSYLSLTPEQWKSHKSYSCQVTHEGSSTVEKTVAPTEC
input PDB
Selected Chain(s) H,L
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:05:19)
[INFO]       Main:     Simulation completed successfully.                                          (00:05:22)
Show buried residues

Minimal score value
-3.1477
Maximal score value
1.3596
Average score
-0.647
Total score value
-290.4881

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 Q L -0.9842
2 S L -0.2482
3 V L 0.9048
4 L L 0.0000
5 T L -0.2396
6 Q L 0.0000
7 P L -0.5017
8 P L -0.7221
9 S L -0.7254
11 A L -0.4752
12 S L -0.2511
13 G L -0.4356
14 T L -0.5345
15 P L -1.0133
16 G L -1.4074
17 Q L -1.6192
18 S L -1.0211
19 V L -0.2788
20 T L -0.1197
21 I L 0.0000
22 S L -0.3226
23 C L 0.0000
24 S L -0.2608
25 G L -0.4549
26 S L -1.1061
27 R L -2.3942
27A S L -1.5467
27B N L 0.0000
28 I L 0.0000
29 G L -1.5857
30 G L -1.3664
31 N L -0.9663
32 T L -0.4345
33 V L 0.0000
34 N L -0.3423
35 W L 0.0000
36 Y L 0.0000
37 Q L -0.7046
38 H L 0.0000
39 L L -0.2397
40 P L -0.2039
41 G L -0.1423
42 M L 0.4276
43 A L -0.1012
44 P L 0.0000
45 K L -1.3085
46 L L 0.0000
47 L L 0.0000
48 I L 0.0000
49 Y L -0.5321
50 S L -0.7541
51 S L 0.0000
52 N L -2.1082
53 Q L -2.1700
54 R L -2.3874
55 S L -1.4146
56 S L -0.9841
57 G L -1.0443
58 V L 0.0000
59 P L -1.5224
60 D L -2.4291
61 R L -1.4826
62 F L 0.0000
63 S L -1.4593
64 G L -1.2093
65 S L -1.1548
66 K L -1.2195
67 S L -0.8066
68 G L -1.1813
69 T L -1.1839
70 S L -0.8494
71 A L 0.0000
72 S L -0.5774
73 L L 0.0000
74 A L -0.1944
75 I L 0.0000
76 S L -1.1171
77 G L -1.1070
78 L L 0.0000
79 Q L -1.5090
80 S L -1.5097
81 E L -2.2501
82 D L 0.0000
83 D L 0.0000
84 A L 0.0000
85 D L -0.8832
86 Y L 0.0000
87 Y L 0.0000
88 C L 0.0000
89 A L 0.0000
90 S L 0.0000
91 W L 0.0000
92 D L 0.0000
93 D L -1.6153
94 S L -0.6985
95 L L 0.1261
95A N L -1.2528
95B G L 0.0000
96 V L 0.0218
97 V L 0.0000
98 F L 0.0000
99 G L 0.0000
100 G L -0.9232
101 G L -0.8660
102 T L 0.0000
103 K L -1.0873
104 L L 0.0000
105 T L -0.3306
106 V L 0.0000
106A L L 0.7049
107 G L -0.3585
108 Q L -0.7801
109 P L -1.1760
110 K L -2.2038
111 A L -1.3197
112 A L -0.6603
113 P L -0.3425
114 S L -0.4044
115 V L -0.3683
116 T L -0.3950
117 L L 0.0000
118 F L 0.0000
119 P L -0.2602
120 P L 0.0000
121 S L -0.7504
122 S L -1.5680
123 E L -2.2022
124 E L 0.0000
125 L L -1.8242
126 Q L -2.5506
127 A L -1.7496
128 N L -2.5642
129 K L -2.4608
130 A L 0.0000
131 T L 0.0000
132 L L 0.0000
133 V L 0.0000
134 C L 0.0000
135 L L 0.0000
136 I L 0.0000
137 S L -0.5526
138 D L -1.1910
139 F L 0.0000
140 Y L -1.1018
141 P L -0.8598
142 G L -0.7023
143 A L -0.2426
144 V L -0.1665
145 T L -0.1351
146 V L 0.2199
147 A L -0.3769
148 W L 0.0000
149 K L -0.9223
150 A L 0.0000
151 D L -1.5275
152 S L -0.9803
153 S L -0.8318
154 P L -0.8759
155 V L -0.8124
156 K L -1.6077
157 A L -0.7413
158 G L -0.5030
159 V L -0.1761
160 E L -0.0789
161 T L 0.1703
162 T L 0.1310
163 T L -0.1162
164 P L -0.2713
165 S L -0.4704
166 K L -1.0127
167 Q L -1.2679
168 S L -1.4366
169 N L -2.1251
170 N L -1.8209
171 K L -1.7319
172 Y L -0.8358
173 A L 0.0000
174 A L 0.0000
175 S L 0.0000
176 S L 0.0000
177 Y L 0.0000
178 L L 0.0000
179 S L -0.4177
180 L L -1.0419
181 T L -1.7602
182 P L 0.0000
183 E L -3.1477
184 Q L -2.3568
185 W L 0.0000
186 K L -3.0554
187 S L -2.4128
188 H L -2.3785
189 K L -2.4366
190 S L -1.5793
191 Y L 0.0000
192 S L 0.0000
193 C L 0.0000
194 Q L -0.6911
195 V L 0.0000
196 T L -0.5431
197 H L 0.0000
198 E L -2.2817
199 G L -1.4563
200 S L -0.7860
201 T L -0.3945
202 V L -0.0410
203 E L -1.4066
204 K L -1.5780
205 T L -1.0354
206 V L 0.0000
207 A L -1.1849
208 P L -1.2557
209 T L -0.9477
210 E L -0.9836
211 C L -0.1890
1 E H -1.9661
2 V H -1.5101
3 Q H -1.5480
4 L H 0.0000
5 V H 0.4839
6 E H 0.0000
7 S H -0.4862
8 G H -0.6703
9 A H -0.7040
10 E H -0.9557
11 V H -0.6905
12 K H -1.5894
13 K H -2.5034
14 P H -2.1599
15 G H -1.7421
16 S H -1.4482
17 S H -1.4816
18 V H 0.0000
19 K H -1.8929
20 V H 0.0000
21 S H -0.5792
22 C H 0.0000
23 R H -1.6108
24 A H 0.0000
25 S H -1.0523
26 G H -0.8753
27 T H -0.1484
28 F H -0.2845
29 Y H 0.3280
30 K H -0.1035
31 Y H 0.1445
32 A H 0.0000
33 I H 0.0000
34 N H 0.0000
36 W H 0.0000
37 V H 0.0000
38 R H 0.0000
39 Q H -0.6708
40 A H -1.1103
41 P H -1.0866
42 G H -1.2362
43 Q H -1.7611
44 G H -1.2450
45 L H 0.0000
46 E H -0.7453
47 W H 0.0000
48 M H 0.0000
49 G H 0.0000
50 G H 0.0000
51 I H 0.0000
52 I H 0.0000
52A P H 0.0000
53 F H 1.1662
54 F H 1.0416
55 G H 0.2320
56 T H 0.1665
57 T H -0.0466
58 N H -0.5043
59 Y H -0.8316
60 A H -1.3050
61 Q H -2.3558
62 K H -2.6428
63 F H 0.0000
64 Q H -2.2714
65 G H -1.4914
66 R H 0.0000
67 L H 0.0000
68 T H -0.6620
69 I H 0.0000
70 T H -0.2620
71 A H -0.3714
72 D H -1.0074
73 G H -0.5790
74 S H -0.5898
75 T H -0.9377
76 N H -1.1291
77 T H 0.0000
78 A H 0.0000
79 Y H -0.5732
80 M H 0.0000
81 Q H -1.2060
82 L H 0.0000
82A D H -1.3656
82B S H -1.3059
82C L H 0.0000
83 R H -2.9186
84 S H -2.2698
85 E H -2.4638
86 D H 0.0000
87 T H -0.9796
88 A H 0.0000
89 V H 0.2079
90 Y H 0.0000
91 Y H 0.0000
92 C H 0.0000
93 A H 0.0000
94 G H 0.0000
95 P H 0.0000
96 S H -0.2713
97 I H -0.0587
98 T H -0.7423
99 E H -1.6881
100 S H -1.3580
100A H H -1.2847
100B Y H -0.6672
100C C H -0.2151
100D L H 0.9658
100E D H -0.8286
100F C H -0.4398
100G A H -0.5103
100H A H -0.8186
100I K H -1.3232
100J D H -1.4122
100K Y H 0.0000
100L Y H -0.0519
100M Y H 0.2862
100N G H 0.0257
100O L H 0.0000
101 D H -0.9788
102 V H -1.0409
103 W H -0.3331
104 G H 0.0000
105 Q H -0.6791
106 G H -0.1608
107 T H 0.0000
108 T H -0.1960
109 V H 0.0000
110 T H -0.8277
111 V H 0.0000
112 S H -1.2026
113 S H -0.9516
114 A H -0.5307
115 S H -0.5623
116 T H -0.6449
117 K H -0.9977
118 G H -1.2273
119 P H -0.4800
120 S H -0.2026
121 V H 0.0000
122 F H -0.4634
123 P H -0.7837
124 L H 0.0000
125 A H -0.8429
126 P H 0.0000
127 S H -0.4072
134 G H -0.6366
135 T H -0.4884
136 A H -0.2910
137 A H -0.1148
138 L H 0.0000
139 G H 0.0000
140 C H 0.0000
141 L H 0.0000
142 V H 0.0000
143 K H 0.0000
144 D H -0.1978
145 Y H 0.0000
146 F H -0.0573
147 P H 0.0000
148 E H -0.5001
149 P H -0.6781
150 V H -0.5437
151 T H -0.4736
152 V H -0.2664
153 S H -0.3148
154 W H 0.0000
155 N H -0.7348
156 S H -0.6379
157 G H -0.4667
158 A H -0.2104
159 L H 0.0257
160 T H -0.1705
161 S H -0.2559
162 G H -0.3553
163 V H 0.1704
164 H H -0.1963
165 T H -0.0890
166 F H 0.0000
167 P H -0.0590
168 A H 0.2986
169 V H 0.0000
170 L H 1.3596
171 Q H 0.4364
172 S H -0.0607
173 S H -0.1480
174 G H 0.1152
175 L H 0.2881
176 Y H 0.5585
177 S H 0.0000
178 L H 0.0000
179 S H 0.0000
180 S H 0.0000
181 V H 0.0000
182 V H 0.0000
183 T H -0.2299
184 V H 0.0000
185 P H -0.5374
186 S H -0.5210
187 S H -0.6162
188 S H -0.6399
189 L H -0.8318
190 G H -1.0202
191 T H -0.8530
192 Q H -1.5362
193 T H -1.1129
194 Y H 0.0000
195 I H -0.8620
196 C H 0.0000
197 N H -1.4075
198 V H 0.0000
199 N H -1.7120
200 H H 0.0000
201 K H -2.6974
202 P H -1.5778
203 S H -1.7270
204 N H -2.4806
205 T H -1.9973
206 K H -2.5982
207 V H -1.4785
208 D H -2.4165
209 K H -1.7477
210 K H -1.9600
211 V H 0.0000
212 E H -2.4867
213 P H -1.2927
214 K H -1.4228
215 S H -1.3413
216 C H -0.7968
217 H H -1.6357
218 H H -2.3268
219 H H -2.4524
220 H H -2.8368
221 H H -2.6901
222 H H -1.9470
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018