| Chain sequence(s) |
A: QVKLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSENVLTQSPAIMSASPGEKVTITCSASSSVSYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELK
input PDB |
| Selected Chain(s) | A |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with A chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:04:23)
[INFO] Main: Simulation completed successfully. (00:04:25)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 27 | Q | A | -1.6005 | |
| 28 | V | A | -1.5151 | |
| 29 | K | A | -2.3123 | |
| 30 | L | A | 0.0000 | |
| 31 | Q | A | -1.8095 | |
| 32 | Q | A | 0.0000 | |
| 33 | S | A | -0.9705 | |
| 34 | G | A | -0.7569 | |
| 35 | A | A | -0.1229 | |
| 36 | E | A | -0.3908 | |
| 37 | L | A | 0.8271 | |
| 38 | V | A | -0.3261 | |
| 39 | R | A | -1.8339 | |
| 40 | S | A | -1.4442 | |
| 41 | G | A | -1.1653 | |
| 42 | T | A | -0.8884 | |
| 43 | S | A | -1.0898 | |
| 44 | V | A | 0.0000 | |
| 45 | K | A | -2.0359 | |
| 46 | L | A | 0.0000 | |
| 47 | S | A | -0.6781 | |
| 48 | C | A | 0.0000 | |
| 49 | T | A | -1.0175 | |
| 50 | A | A | 0.0000 | |
| 51 | S | A | -1.4348 | |
| 52 | G | A | -1.2943 | |
| 53 | F | A | -1.4459 | |
| 54 | N | A | -2.1432 | |
| 55 | I | A | 0.0000 | |
| 56 | K | A | -3.0976 | |
| 57 | D | A | -2.8267 | |
| 58 | S | A | 0.0000 | |
| 59 | Y | A | -0.6427 | |
| 60 | M | A | 0.0000 | |
| 61 | H | A | 0.0000 | |
| 62 | W | A | 0.0000 | |
| 63 | L | A | 0.0000 | |
| 64 | R | A | 0.0000 | |
| 65 | Q | A | 0.0000 | |
| 66 | G | A | -1.4596 | |
| 67 | P | A | -1.7610 | |
| 68 | E | A | -2.5572 | |
| 69 | Q | A | -2.2152 | |
| 70 | G | A | -1.3785 | |
| 71 | L | A | 0.0000 | |
| 72 | E | A | -0.7884 | |
| 73 | W | A | 0.0000 | |
| 74 | I | A | 0.0000 | |
| 75 | G | A | 0.0000 | |
| 76 | W | A | -0.2036 | |
| 77 | I | A | 0.0000 | |
| 78 | D | A | -2.1740 | |
| 79 | P | A | 0.0000 | |
| 80 | E | A | -3.5875 | |
| 81 | N | A | -3.0184 | |
| 82 | G | A | -2.4654 | |
| 83 | D | A | -2.6147 | |
| 84 | T | A | -1.2323 | |
| 85 | E | A | -0.7347 | |
| 86 | Y | A | -0.6872 | |
| 87 | A | A | 0.0000 | |
| 88 | P | A | -1.6490 | |
| 89 | K | A | -2.3174 | |
| 90 | F | A | 0.0000 | |
| 91 | Q | A | -2.1367 | |
| 92 | G | A | -1.5384 | |
| 93 | K | A | -1.4187 | |
| 94 | A | A | 0.0000 | |
| 95 | T | A | -0.7696 | |
| 96 | F | A | 0.0000 | |
| 97 | T | A | -0.8007 | |
| 98 | T | A | -1.2821 | |
| 99 | D | A | -1.8119 | |
| 100 | T | A | -1.6635 | |
| 101 | S | A | -0.8468 | |
| 102 | S | A | -0.9806 | |
| 103 | N | A | -1.2095 | |
| 104 | T | A | 0.0000 | |
| 105 | A | A | 0.0000 | |
| 106 | Y | A | -0.6289 | |
| 107 | L | A | 0.0000 | |
| 108 | Q | A | -1.3902 | |
| 109 | L | A | 0.0000 | |
| 110 | S | A | -0.9163 | |
| 111 | S | A | -0.8447 | |
| 112 | L | A | 0.0000 | |
| 113 | T | A | -1.3109 | |
| 114 | S | A | -1.4433 | |
| 115 | E | A | -1.9608 | |
| 116 | D | A | 0.0000 | |
| 117 | T | A | -0.5125 | |
| 118 | A | A | 0.0000 | |
| 119 | V | A | 0.0620 | |
| 120 | Y | A | 0.0000 | |
| 121 | Y | A | 0.0000 | |
| 122 | C | A | 0.0000 | |
| 123 | N | A | 0.0000 | |
| 124 | E | A | 0.0000 | |
| 125 | G | A | 0.0000 | |
| 126 | T | A | 0.0400 | |
| 127 | P | A | -0.3491 | |
| 128 | T | A | -0.2824 | |
| 129 | G | A | -0.4577 | |
| 130 | P | A | -0.0174 | |
| 131 | Y | A | 0.0000 | |
| 132 | Y | A | 1.1914 | |
| 133 | F | A | 0.9085 | |
| 134 | D | A | 0.1684 | |
| 135 | Y | A | -0.3424 | |
| 136 | W | A | -0.7818 | |
| 137 | G | A | 0.0000 | |
| 138 | Q | A | -1.7172 | |
| 139 | G | A | -0.7947 | |
| 140 | T | A | 0.0000 | |
| 141 | T | A | -0.0319 | |
| 142 | V | A | 0.0000 | |
| 143 | T | A | -0.1328 | |
| 144 | V | A | 0.0000 | |
| 145 | S | A | -0.7622 | |
| 146 | S | A | -1.1080 | |
| 162 | E | A | -1.2193 | |
| 163 | N | A | -0.2075 | |
| 164 | V | A | 1.0477 | |
| 165 | L | A | 0.0000 | |
| 166 | T | A | 0.2203 | |
| 167 | Q | A | 0.0000 | |
| 168 | S | A | -0.0074 | |
| 169 | P | A | 0.2934 | |
| 170 | A | A | 0.5935 | |
| 171 | I | A | 1.1131 | |
| 172 | M | A | 0.2533 | |
| 173 | S | A | -0.7681 | |
| 174 | A | A | 0.0000 | |
| 175 | S | A | -1.7686 | |
| 176 | P | A | -2.0853 | |
| 177 | G | A | -2.2803 | |
| 178 | E | A | -2.9846 | |
| 179 | K | A | -3.2032 | |
| 180 | V | A | 0.0000 | |
| 181 | T | A | -0.5370 | |
| 182 | I | A | 0.0000 | |
| 183 | T | A | -0.2661 | |
| 184 | C | A | 0.0000 | |
| 185 | S | A | -0.1714 | |
| 186 | A | A | 0.0868 | |
| 187 | S | A | -0.1911 | |
| 188 | S | A | -0.5128 | |
| 189 | S | A | -0.4812 | |
| 190 | V | A | 0.0000 | |
| 191 | S | A | 0.0866 | |
| 192 | Y | A | 0.7919 | |
| 193 | M | A | 0.0000 | |
| 194 | H | A | 0.0000 | |
| 195 | W | A | 0.0000 | |
| 196 | F | A | 0.0000 | |
| 197 | Q | A | 0.0000 | |
| 198 | Q | A | -1.2663 | |
| 199 | K | A | -1.8277 | |
| 200 | P | A | -1.0237 | |
| 201 | G | A | -1.0537 | |
| 202 | T | A | -1.1495 | |
| 203 | S | A | -1.0019 | |
| 204 | P | A | 0.0000 | |
| 205 | K | A | -1.5509 | |
| 206 | L | A | 0.0000 | |
| 207 | W | A | 0.0000 | |
| 208 | I | A | 0.0000 | |
| 209 | Y | A | 0.3978 | |
| 210 | S | A | 0.1940 | |
| 211 | T | A | -0.0669 | |
| 212 | S | A | -0.4904 | |
| 213 | N | A | -0.6914 | |
| 214 | L | A | -0.0098 | |
| 215 | A | A | 0.0000 | |
| 216 | S | A | -0.1888 | |
| 217 | G | A | -0.4977 | |
| 218 | V | A | 0.0000 | |
| 219 | P | A | -0.2232 | |
| 220 | A | A | -0.1502 | |
| 221 | R | A | -1.1065 | |
| 222 | F | A | 0.0000 | |
| 223 | S | A | -0.4282 | |
| 224 | G | A | -0.4464 | |
| 225 | S | A | -0.4856 | |
| 226 | G | A | -0.3920 | |
| 227 | S | A | -0.3679 | |
| 228 | G | A | -0.4415 | |
| 229 | T | A | -0.4381 | |
| 230 | S | A | -0.5835 | |
| 231 | Y | A | 0.0000 | |
| 232 | S | A | -0.3530 | |
| 233 | L | A | 0.0000 | |
| 234 | T | A | -0.7991 | |
| 235 | I | A | 0.0000 | |
| 236 | S | A | -2.1562 | |
| 237 | R | A | -3.3786 | |
| 238 | M | A | 0.0000 | |
| 239 | E | A | -2.5367 | |
| 240 | A | A | -1.6516 | |
| 241 | E | A | -2.1687 | |
| 242 | D | A | 0.0000 | |
| 243 | A | A | -1.5416 | |
| 244 | A | A | 0.0000 | |
| 245 | T | A | -0.8687 | |
| 246 | Y | A | 0.0000 | |
| 247 | Y | A | 0.0000 | |
| 248 | C | A | 0.0000 | |
| 249 | Q | A | 0.0000 | |
| 250 | Q | A | 0.0000 | |
| 251 | R | A | -0.0293 | |
| 252 | S | A | 0.0094 | |
| 253 | S | A | -0.0709 | |
| 254 | Y | A | 0.6640 | |
| 255 | P | A | 0.0000 | |
| 256 | L | A | 0.0000 | |
| 257 | T | A | 0.0000 | |
| 258 | F | A | 0.0000 | |
| 259 | G | A | 0.0000 | |
| 260 | A | A | -0.3962 | |
| 261 | G | A | 0.0000 | |
| 262 | T | A | 0.0000 | |
| 263 | K | A | -0.7156 | |
| 264 | L | A | 0.0000 | |
| 265 | E | A | -1.3063 | |
| 266 | L | A | -1.1672 | |
| 267 | K | A | -1.6695 |