Project name: c628470a76aa2f0

Status: done

Started: 2026-04-12 13:17:01
Settings
Chain sequence(s) A: FYGHKYF
C: FYGHKYF
B: FYGHKYF
E: FYGHKYF
D: FYGHKYF
G: FYGHKYF
F: FYGHKYF
I: FYGHKYF
H: FYGHKYF
K: FYGHKYF
J: FYGHKYF
M: FYGHKYF
L: FYGHKYF
O: FYGHKYF
N: FYGHKYF
Q: FYGHKYF
P: FYGHKYF
S: FYGHKYF
R: FYGHKYF
T: FYGHKYF
input PDB
Selected Chain(s) A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with all chain(s) selected           (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:02:04)
[INFO]       Main:     Simulation completed successfully.                                          (00:02:08)
Show buried residues

Minimal score value
-1.4086
Maximal score value
4.405
Average score
1.6418
Total score value
229.8576

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 F A 3.7917
2 Y A 2.5165
3 G A 0.0000
4 H A -0.7679
5 K A -0.4922
6 Y A 1.5637
7 F A 3.7443
1 F B 3.1955
2 Y B 2.2474
3 G B 0.3430
4 H B -1.0531
5 K B -1.4086
6 Y B 0.9380
7 F B 2.8749
1 F C 3.9235
2 Y C 2.9911
3 G C 0.0000
4 H C -0.3021
5 K C -0.3710
6 Y C 1.8060
7 F C 3.9022
1 F D 3.9101
2 Y D 2.9428
3 G D 0.0000
4 H D -0.0746
5 K D -0.2091
6 Y D 1.9592
7 F D 3.9627
1 F E 3.9648
2 Y E 2.9129
3 G E 0.0000
4 H E -0.0942
5 K E -0.1135
6 Y E 1.9988
7 F E 3.9022
1 F F 3.9221
2 Y F 2.9109
3 G F 0.0000
4 H F -0.1221
5 K F -0.2182
6 Y F 1.9765
7 F F 3.9647
1 F G 3.9991
2 Y G 3.0069
3 G G 0.0000
4 H G -0.1171
5 K G -0.1815
6 Y G 1.9464
7 F G 3.9003
1 F H 3.9822
2 Y H 2.9589
3 G H 0.0000
4 H H -0.1385
5 K H -0.2115
6 Y H 1.9295
7 F H 3.8938
1 F I 3.9259
2 Y I 2.9223
3 G I 0.0000
4 H I -0.1275
5 K I -0.2258
6 Y I 1.9514
7 F I 3.9395
1 F J 3.9683
2 Y J 2.9446
3 G J 0.0000
4 H J -0.1084
5 K J -0.2012
6 Y J 1.8997
7 F J 3.8746
1 F K 3.8341
2 Y K 2.8511
3 G K 0.0000
4 H K -0.1138
5 K K -0.1564
6 Y K 1.9931
7 F K 3.9020
1 F L 3.5750
2 Y L 2.6660
3 G L 0.0000
4 H L -0.0325
5 K L -0.0130
6 Y L 1.9289
7 F L 3.4377
1 F M 3.8120
2 Y M 2.8185
3 G M 0.0000
4 H M 0.0000
5 K M -0.1586
6 Y M 0.0000
7 F M 3.6807
1 F N 3.6485
2 Y N 0.0000
3 G N 0.0000
4 H N 0.0000
5 K N -0.0094
6 Y N 1.8322
7 F N 3.7843
1 F O 4.4050
2 Y O 3.8780
3 G O 0.0000
4 H O -0.1949
5 K O 0.1036
6 Y O 2.2491
7 F O 3.8890
1 F P 3.7956
2 Y P 3.0705
3 G P 0.0000
4 H P 0.0939
5 K P 0.0000
6 Y P 2.2389
7 F P 3.5390
1 F Q 2.9607
2 Y Q 2.2792
3 G Q 0.7411
4 H Q -0.6288
5 K Q -0.8233
6 Y Q 1.4547
7 F Q 2.8321
1 F R 4.1377
2 Y R 3.3025
3 G R 0.0000
4 H R -0.4242
5 K R -0.1935
6 Y R 1.8803
7 F R 3.8480
1 F S 3.4215
2 Y S 3.0746
3 G S 0.6242
4 H S -0.9325
5 K S -0.8951
6 Y S 2.1577
7 F S 3.3461
1 F T 3.1340
2 Y T 2.3760
3 G T 0.6042
4 H T -0.5038
5 K T -0.0610
6 Y T 1.9618
7 F T 3.1645
Download PDB file
View in 3Dmol
Play the video

Laboratory of Theory of Biopolymers 2018