| Chain sequence(s) |
A: FYGHKYF
C: FYGHKYF B: FYGHKYF E: FYGHKYF D: FYGHKYF G: FYGHKYF F: FYGHKYF I: FYGHKYF H: FYGHKYF K: FYGHKYF J: FYGHKYF M: FYGHKYF L: FYGHKYF O: FYGHKYF N: FYGHKYF Q: FYGHKYF P: FYGHKYF S: FYGHKYF R: FYGHKYF T: FYGHKYF input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,I,H,K,J,M,L,O,N,Q,P,S,R,T |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:02:04)
[INFO] Main: Simulation completed successfully. (00:02:08)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 3.7917 | |
| 2 | Y | A | 2.5165 | |
| 3 | G | A | 0.0000 | |
| 4 | H | A | -0.7679 | |
| 5 | K | A | -0.4922 | |
| 6 | Y | A | 1.5637 | |
| 7 | F | A | 3.7443 | |
| 1 | F | B | 3.1955 | |
| 2 | Y | B | 2.2474 | |
| 3 | G | B | 0.3430 | |
| 4 | H | B | -1.0531 | |
| 5 | K | B | -1.4086 | |
| 6 | Y | B | 0.9380 | |
| 7 | F | B | 2.8749 | |
| 1 | F | C | 3.9235 | |
| 2 | Y | C | 2.9911 | |
| 3 | G | C | 0.0000 | |
| 4 | H | C | -0.3021 | |
| 5 | K | C | -0.3710 | |
| 6 | Y | C | 1.8060 | |
| 7 | F | C | 3.9022 | |
| 1 | F | D | 3.9101 | |
| 2 | Y | D | 2.9428 | |
| 3 | G | D | 0.0000 | |
| 4 | H | D | -0.0746 | |
| 5 | K | D | -0.2091 | |
| 6 | Y | D | 1.9592 | |
| 7 | F | D | 3.9627 | |
| 1 | F | E | 3.9648 | |
| 2 | Y | E | 2.9129 | |
| 3 | G | E | 0.0000 | |
| 4 | H | E | -0.0942 | |
| 5 | K | E | -0.1135 | |
| 6 | Y | E | 1.9988 | |
| 7 | F | E | 3.9022 | |
| 1 | F | F | 3.9221 | |
| 2 | Y | F | 2.9109 | |
| 3 | G | F | 0.0000 | |
| 4 | H | F | -0.1221 | |
| 5 | K | F | -0.2182 | |
| 6 | Y | F | 1.9765 | |
| 7 | F | F | 3.9647 | |
| 1 | F | G | 3.9991 | |
| 2 | Y | G | 3.0069 | |
| 3 | G | G | 0.0000 | |
| 4 | H | G | -0.1171 | |
| 5 | K | G | -0.1815 | |
| 6 | Y | G | 1.9464 | |
| 7 | F | G | 3.9003 | |
| 1 | F | H | 3.9822 | |
| 2 | Y | H | 2.9589 | |
| 3 | G | H | 0.0000 | |
| 4 | H | H | -0.1385 | |
| 5 | K | H | -0.2115 | |
| 6 | Y | H | 1.9295 | |
| 7 | F | H | 3.8938 | |
| 1 | F | I | 3.9259 | |
| 2 | Y | I | 2.9223 | |
| 3 | G | I | 0.0000 | |
| 4 | H | I | -0.1275 | |
| 5 | K | I | -0.2258 | |
| 6 | Y | I | 1.9514 | |
| 7 | F | I | 3.9395 | |
| 1 | F | J | 3.9683 | |
| 2 | Y | J | 2.9446 | |
| 3 | G | J | 0.0000 | |
| 4 | H | J | -0.1084 | |
| 5 | K | J | -0.2012 | |
| 6 | Y | J | 1.8997 | |
| 7 | F | J | 3.8746 | |
| 1 | F | K | 3.8341 | |
| 2 | Y | K | 2.8511 | |
| 3 | G | K | 0.0000 | |
| 4 | H | K | -0.1138 | |
| 5 | K | K | -0.1564 | |
| 6 | Y | K | 1.9931 | |
| 7 | F | K | 3.9020 | |
| 1 | F | L | 3.5750 | |
| 2 | Y | L | 2.6660 | |
| 3 | G | L | 0.0000 | |
| 4 | H | L | -0.0325 | |
| 5 | K | L | -0.0130 | |
| 6 | Y | L | 1.9289 | |
| 7 | F | L | 3.4377 | |
| 1 | F | M | 3.8120 | |
| 2 | Y | M | 2.8185 | |
| 3 | G | M | 0.0000 | |
| 4 | H | M | 0.0000 | |
| 5 | K | M | -0.1586 | |
| 6 | Y | M | 0.0000 | |
| 7 | F | M | 3.6807 | |
| 1 | F | N | 3.6485 | |
| 2 | Y | N | 0.0000 | |
| 3 | G | N | 0.0000 | |
| 4 | H | N | 0.0000 | |
| 5 | K | N | -0.0094 | |
| 6 | Y | N | 1.8322 | |
| 7 | F | N | 3.7843 | |
| 1 | F | O | 4.4050 | |
| 2 | Y | O | 3.8780 | |
| 3 | G | O | 0.0000 | |
| 4 | H | O | -0.1949 | |
| 5 | K | O | 0.1036 | |
| 6 | Y | O | 2.2491 | |
| 7 | F | O | 3.8890 | |
| 1 | F | P | 3.7956 | |
| 2 | Y | P | 3.0705 | |
| 3 | G | P | 0.0000 | |
| 4 | H | P | 0.0939 | |
| 5 | K | P | 0.0000 | |
| 6 | Y | P | 2.2389 | |
| 7 | F | P | 3.5390 | |
| 1 | F | Q | 2.9607 | |
| 2 | Y | Q | 2.2792 | |
| 3 | G | Q | 0.7411 | |
| 4 | H | Q | -0.6288 | |
| 5 | K | Q | -0.8233 | |
| 6 | Y | Q | 1.4547 | |
| 7 | F | Q | 2.8321 | |
| 1 | F | R | 4.1377 | |
| 2 | Y | R | 3.3025 | |
| 3 | G | R | 0.0000 | |
| 4 | H | R | -0.4242 | |
| 5 | K | R | -0.1935 | |
| 6 | Y | R | 1.8803 | |
| 7 | F | R | 3.8480 | |
| 1 | F | S | 3.4215 | |
| 2 | Y | S | 3.0746 | |
| 3 | G | S | 0.6242 | |
| 4 | H | S | -0.9325 | |
| 5 | K | S | -0.8951 | |
| 6 | Y | S | 2.1577 | |
| 7 | F | S | 3.3461 | |
| 1 | F | T | 3.1340 | |
| 2 | Y | T | 2.3760 | |
| 3 | G | T | 0.6042 | |
| 4 | H | T | -0.5038 | |
| 5 | K | T | -0.0610 | |
| 6 | Y | T | 1.9618 | |
| 7 | F | T | 3.1645 |