Project name: 1JSF [mutate: YN54A]

Status: done

Started: 2024-11-21 06:56:14
Settings
Chain sequence(s) A: KVFERCELARTLKRLGMDGYRGISLANWMCLAKWESGYNTRATNYNAGDRSTDYGIFQINSRYWCNDGKTPGAVNACHLSCSALLQDNIADAVACAKRVVRDPQGIRAWVAWRNRCQNRDVRQYVQGCGV
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Mutated residues YN54A
Energy difference between WT (input) and mutated protein (by FoldX) 4.43732 kcal/mol

CAUTION: Your mutation/s can destabilize the protein structure

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Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       FoldX:    Building mutant model                                                       (00:00:34)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:43)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:01:14)
[INFO]       Main:     Simulation completed successfully.                                          (00:01:14)
Show buried residues

Minimal score value
-4.2631
Maximal score value
1.7452
Average score
-1.006
Total score value
-130.7836

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 K A -1.8470
2 V A -0.0615
3 F A 0.0000
4 E A -2.1397
5 R A -2.1298
6 C A -1.7866
7 E A -2.0638
8 L A 0.0000
9 A A 0.0000
10 R A -2.8341
11 T A 0.0000
12 L A 0.0000
13 K A -2.6947
14 R A -2.7548
15 L A -1.3923
16 G A -1.4418
17 M A 0.0000
18 D A -2.2864
19 G A -1.7900
20 Y A -1.7450
21 R A -2.7683
22 G A -1.6696
23 I A 0.0000
24 S A -1.3084
25 L A 0.0000
26 A A 0.0000
27 N A -1.2233
28 W A 0.0000
29 M A 0.0000
30 C A 0.0000
31 L A 0.0000
32 A A 0.0000
33 K A -1.2397
34 W A -0.6179
35 E A -0.6025
36 S A -0.7777
37 G A -0.7674
38 Y A 0.0000
39 N A -1.2425
40 T A 0.0000
41 R A -2.2966
42 A A -1.2259
43 T A -0.7588
44 N A -0.3901
45 Y A 0.0494
46 N A -1.1190
47 A A -1.1785
48 G A -1.6624
49 D A -2.6801
50 R A -2.8602
51 S A 0.0000
52 T A 0.0000
53 D A -0.4388
54 N A 0.0000 mutated: YN54A
55 G A 0.0000
56 I A 0.0000
57 F A 0.0000
58 Q A -0.6657
59 I A 0.0000
60 N A -0.1925
61 S A 0.0000
62 R A -0.2675
63 Y A 1.6374
64 W A 0.4845
65 C A 0.0000
66 N A -1.0997
67 D A -1.7130
68 G A -1.6511
69 K A -2.1008
70 T A 0.0000
71 P A -1.3194
72 G A -0.5007
73 A A 0.3444
74 V A 1.7452
75 N A 0.3706
76 A A 0.3210
77 C A -0.3656
78 H A -0.7635
79 L A -0.6672
80 S A -0.8468
81 C A 0.0000
82 S A -0.6745
83 A A -0.7844
84 L A 0.0000
85 L A -1.6288
86 Q A -2.4591
87 D A -3.1131
88 N A -2.5802
89 I A 0.0000
90 A A -0.8480
91 D A -0.8918
92 A A 0.0000
93 V A 0.0000
94 A A -0.4961
95 C A 0.0000
96 A A 0.0000
97 K A -1.7553
98 R A -2.0806
99 V A 0.0000
100 V A 0.0000
101 R A -3.2782
102 D A -2.7064
103 P A -1.5439
104 Q A -1.5129
105 G A -2.0526
106 I A 0.0000
107 R A -1.7161
108 A A -0.6426
109 W A 0.0000
110 V A 0.3411
111 A A -0.7407
112 W A -1.6086
113 R A -2.8768
114 N A -2.7635
115 R A -2.7567
116 C A 0.0000
117 Q A -3.2103
118 N A -3.3704
119 R A -4.2631
120 D A -3.7383
121 V A -3.0873
122 R A -3.4303
123 Q A -2.8317
124 Y A 0.0000
125 V A 0.0000
126 Q A -2.2603
127 G A -1.2421
128 C A 0.0000
129 G A -0.7150
130 V A -0.4688
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Laboratory of Theory of Biopolymers 2018