Project name: query_structure

Status: done

Started: 2026-03-16 23:50:54
Settings
Chain sequence(s) A: LPAPKNLVVSRVTEDSARLSWTAPDAAFDSFAIEYFEDWWSGEAIVLTVPGSERSCDLTGLKPGTEYSVTIRGVKGGYPSSPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:40)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:40)
Show buried residues

Minimal score value
-3.1253
Maximal score value
2.1213
Average score
-0.5753
Total score value
-51.2048

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 0.2597
2 P A -0.4256
3 A A -0.7068
4 P A 0.0000
5 K A -2.0657
6 N A -1.4105
7 L A -0.1405
8 V A 1.1925
9 V A 0.6442
10 S A -0.6033
11 R A -2.0072
12 V A -1.0693
13 T A -1.8368
14 E A -3.1253
15 D A -2.8762
16 S A -2.1334
17 A A 0.0000
18 R A -1.2864
19 L A 0.0000
20 S A -0.4420
21 W A 0.0000
22 T A -1.3040
23 A A -1.4233
24 P A -1.4044
25 D A -2.2826
26 A A -1.4818
27 A A -1.2108
28 F A 0.0000
29 D A -2.4709
30 S A -1.6094
31 F A 0.0000
32 A A 0.1132
33 I A 0.0000
34 E A 0.4456
35 Y A 0.0000
36 F A 0.5304
37 E A -0.4277
38 D A -0.6255
39 W A 0.7784
40 W A 0.7538
41 S A -0.2244
42 G A -0.6924
43 E A -1.2380
44 A A 0.3063
45 I A 1.6172
46 V A 2.1213
47 L A 1.1876
48 T A 0.3391
49 V A 0.0000
50 P A -1.1730
51 G A 0.0000
52 S A -1.6681
53 E A -1.7140
54 R A -1.2755
55 S A -0.8577
56 C A -1.0533
57 D A -1.7219
58 L A 0.0000
59 T A -1.4047
60 G A -1.5444
61 L A 0.0000
62 K A -2.9919
63 P A -2.4472
64 G A -1.6838
65 T A 0.0000
66 E A -0.6178
67 Y A 0.0000
68 S A 0.3221
69 V A 0.0000
70 T A 0.1963
71 I A 0.0000
72 R A -0.6349
73 G A 0.0000
74 V A -0.8152
75 K A -1.6536
76 G A -1.2163
77 G A -0.6496
78 Y A 0.3825
79 P A -0.1431
80 S A 0.0000
81 S A -0.1886
82 P A -0.6066
83 L A -0.5150
84 S A 0.0721
85 A A 1.2051
86 I A 1.8359
87 F A 0.0000
88 T A -0.6569
89 T A -1.7508
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Laboratory of Theory of Biopolymers 2018