| Chain sequence(s) |
H: EVQLVESGGGLVQPGGSLRLSCAASGYSFTDFYINWVRQAPGKGLEWVARIFPGGDNTYYNEKFKGRFTLSADTSKSTAYLQMNSLRAEDTAVYYCARRGLYYAMDYWGQGTLVTVSS
L: DIQMTQSPSSLSASVGDRVTITCRSSQSLVHSNGIPYLHWYQQKPGKAPKLLIYRVSNRFSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCSQGTHVPPTFGQGTKVEIK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:44)
[INFO] Main: Simulation completed successfully. (00:01:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | E | H | -2.1051 | |
| 2 | V | H | -1.2450 | |
| 3 | Q | H | -1.2442 | |
| 4 | L | H | 0.0000 | |
| 5 | V | H | 0.4123 | |
| 6 | E | H | 0.0000 | |
| 7 | S | H | -0.3423 | |
| 8 | G | H | -0.6320 | |
| 9 | G | H | 0.1128 | |
| 11 | G | H | 0.8250 | |
| 12 | L | H | 1.3776 | |
| 13 | V | H | -0.0018 | |
| 14 | Q | H | -1.2370 | |
| 15 | P | H | -1.2448 | |
| 16 | G | H | -1.1707 | |
| 17 | G | H | -0.9794 | |
| 18 | S | H | -1.1050 | |
| 19 | L | H | -0.8994 | |
| 20 | R | H | -1.9348 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.4040 | |
| 23 | C | H | 0.0000 | |
| 24 | A | H | -0.1911 | |
| 25 | A | H | -0.4064 | |
| 26 | S | H | -0.9542 | |
| 27 | G | H | -1.2566 | |
| 28 | Y | H | -0.7409 | |
| 29 | S | H | -0.7429 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.0541 | |
| 36 | D | H | -1.2639 | |
| 37 | F | H | -0.0358 | |
| 38 | Y | H | -0.0861 | |
| 39 | I | H | 0.0000 | |
| 40 | N | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | R | H | 0.0000 | |
| 44 | Q | H | -0.5595 | |
| 45 | A | H | -0.9754 | |
| 46 | P | H | -0.7989 | |
| 47 | G | H | -1.4481 | |
| 48 | K | H | -2.3001 | |
| 49 | G | H | -1.4677 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -0.7571 | |
| 52 | W | H | 0.0000 | |
| 53 | V | H | 0.0000 | |
| 54 | A | H | 0.0000 | |
| 55 | R | H | -0.4066 | |
| 56 | I | H | 0.0000 | |
| 57 | F | H | -0.9634 | |
| 58 | P | H | 0.0000 | |
| 59 | G | H | -1.4780 | |
| 62 | G | H | -1.7064 | |
| 63 | D | H | -2.5741 | |
| 64 | N | H | -2.1371 | |
| 65 | T | H | -0.9454 | |
| 66 | Y | H | -0.2828 | |
| 67 | Y | H | -0.8268 | |
| 68 | N | H | -1.8296 | |
| 69 | E | H | -3.4290 | |
| 70 | K | H | -3.1646 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -3.0541 | |
| 74 | G | H | -1.9802 | |
| 75 | R | H | -1.6252 | |
| 76 | F | H | 0.0000 | |
| 77 | T | H | -0.8519 | |
| 78 | L | H | 0.0000 | |
| 79 | S | H | -0.6532 | |
| 80 | A | H | -0.7830 | |
| 81 | D | H | -1.1367 | |
| 82 | T | H | -0.9850 | |
| 83 | S | H | -1.1510 | |
| 84 | K | H | -1.9409 | |
| 85 | S | H | -1.0852 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.4793 | |
| 89 | L | H | 0.0000 | |
| 90 | Q | H | -1.1930 | |
| 91 | M | H | 0.0000 | |
| 92 | N | H | -1.2362 | |
| 93 | S | H | -1.0800 | |
| 94 | L | H | 0.0000 | |
| 95 | R | H | -2.2553 | |
| 96 | A | H | -1.6689 | |
| 97 | E | H | -2.2181 | |
| 98 | D | H | 0.0000 | |
| 99 | T | H | -0.3577 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.7181 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.4785 | |
| 108 | G | H | 0.0000 | |
| 109 | L | H | 1.8925 | |
| 110 | Y | H | 1.5901 | |
| 113 | Y | H | 1.4556 | |
| 114 | A | H | 0.0000 | |
| 115 | M | H | 0.0000 | |
| 116 | D | H | 0.0912 | |
| 117 | Y | H | -0.3193 | |
| 118 | W | H | -0.5700 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.2123 | |
| 121 | G | H | -0.3448 | |
| 122 | T | H | 0.4844 | |
| 123 | L | H | 1.4773 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | 0.3459 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.4686 | |
| 128 | S | H | -0.4259 | |
| 1 | D | L | -2.2136 | |
| 2 | I | L | 0.0000 | |
| 3 | Q | L | -2.2742 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -1.3922 | |
| 6 | Q | L | 0.0000 | |
| 7 | S | L | -0.7166 | |
| 8 | P | L | -0.5536 | |
| 9 | S | L | -0.7493 | |
| 10 | S | L | -0.8079 | |
| 11 | L | L | -0.6381 | |
| 12 | S | L | -0.9006 | |
| 13 | A | L | -1.0160 | |
| 14 | S | L | -0.8107 | |
| 15 | V | L | 0.0469 | |
| 16 | G | L | -0.8207 | |
| 17 | D | L | -1.8728 | |
| 18 | R | L | -2.3514 | |
| 19 | V | L | 0.0000 | |
| 20 | T | L | -0.6458 | |
| 21 | I | L | 0.0000 | |
| 22 | T | L | -0.7987 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.7260 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -1.9287 | |
| 27 | Q | L | -2.0393 | |
| 28 | S | L | -0.9738 | |
| 29 | L | L | 0.0000 | |
| 30 | V | L | 0.1696 | |
| 31 | H | L | -0.5839 | |
| 32 | S | L | -0.8518 | |
| 34 | N | L | -1.4208 | |
| 35 | G | L | -0.7663 | |
| 36 | I | L | -0.0322 | |
| 37 | P | L | -0.0249 | |
| 38 | Y | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | Q | L | 0.0000 | |
| 44 | Q | L | 0.0000 | |
| 45 | K | L | -1.6007 | |
| 46 | P | L | -1.1326 | |
| 47 | G | L | -1.6350 | |
| 48 | K | L | -2.6405 | |
| 49 | A | L | -1.6881 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.8616 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | -0.0728 | |
| 56 | R | L | -0.2500 | |
| 57 | V | L | 0.0000 | |
| 65 | S | L | -0.9415 | |
| 66 | N | L | -1.3207 | |
| 67 | R | L | -1.4512 | |
| 68 | F | L | -0.6859 | |
| 69 | S | L | -0.5617 | |
| 70 | G | L | -0.6071 | |
| 71 | V | L | -0.6887 | |
| 72 | P | L | -0.4940 | |
| 74 | S | L | -0.6496 | |
| 75 | R | L | -0.8046 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -0.6896 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.7161 | |
| 80 | G | L | -1.0100 | |
| 83 | S | L | -0.6788 | |
| 84 | G | L | -0.7397 | |
| 85 | T | L | -1.4711 | |
| 86 | D | L | -2.0225 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.7019 | |
| 89 | L | L | 0.0000 | |
| 90 | T | L | -0.6048 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -1.5152 | |
| 93 | S | L | -1.3481 | |
| 94 | L | L | 0.0000 | |
| 95 | Q | L | -0.9678 | |
| 96 | P | L | -1.0592 | |
| 97 | E | L | -1.5239 | |
| 98 | D | L | 0.0000 | |
| 99 | F | L | -0.3064 | |
| 100 | A | L | 0.0000 | |
| 101 | T | L | -0.6447 | |
| 102 | Y | L | 0.0000 | |
| 103 | Y | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | S | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | G | L | 0.2958 | |
| 108 | T | L | 0.3306 | |
| 109 | H | L | -0.0608 | |
| 114 | V | L | 1.2043 | |
| 115 | P | L | 0.1227 | |
| 116 | P | L | 0.0000 | |
| 117 | T | L | -0.5062 | |
| 118 | F | L | -0.3614 | |
| 119 | G | L | 0.0000 | |
| 120 | Q | L | -1.5215 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -1.1717 | |
| 124 | V | L | 0.0000 | |
| 125 | E | L | -1.2089 | |
| 126 | I | L | -0.7582 | |
| 127 | K | L | -1.5341 |