Project name: query_structure

Status: done

Started: 2026-03-16 20:38:12
Settings
Chain sequence(s) A: LPAPKNLWSRVTEDSARLSWTAPDAAFDSFWIRYFEFLGSGEAIVLTVPGSERSYDLTGLKPGTEYWQIIGVKGGHISLPLSAIFTT
input PDB
Selected Chain(s) A
Distance of aggregation 10 Å
FoldX usage Yes
Dynamic mode No
Automated mutations No
Downloads Download all the data
Simulation log
[INFO]       Logger:   Verbosity set to: 2 - [INFO]                                                (00:00:00)
[WARNING]    runJob:   Working directory already exists (possibly overwriting previous results -ow 
                       to prevent this behavior)                                                   (00:00:00)
[INFO]       runJob:   Starting aggrescan3d job on: input.pdb with A chain(s) selected             (00:00:00)
[INFO]       runJob:   Creating pdb object from: input.pdb                                         (00:00:00)
[INFO]       FoldX:    Starting FoldX energy minimalization                                        (00:00:00)
[INFO]       Analysis: Starting Aggrescan3D on folded.pdb                                          (00:00:44)
[INFO]       Main:     Simulation completed successfully.                                          (00:00:44)
Show buried residues

Minimal score value
-2.7708
Maximal score value
2.8104
Average score
-0.3514
Total score value
-30.5678

The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.

residue index residue name chain Aggrescan3D score mutation
residue index residue name chain Aggrescan3D score
mutation
1 L A 1.2951
2 P A 0.5437
3 A A 0.6174
4 P A 0.0000
5 K A -1.8578
6 N A -1.5346
7 L A -0.3997
8 W A -0.0001
9 S A 0.0000
10 R A -2.0068
11 V A -1.3890
12 T A -1.6556
13 E A -2.7708
14 D A -2.7499
15 S A -2.3231
16 A A 0.0000
17 R A -2.2645
18 L A 0.0000
19 S A -0.9691
20 W A 0.0000
21 T A -1.2526
22 A A -1.3447
23 P A -1.3187
24 D A -2.2640
25 A A -1.4432
26 A A -1.0791
27 F A 0.0000
28 D A -2.6946
29 S A -1.1111
30 F A 0.0000
31 W A 0.7483
32 I A 0.0000
33 R A 0.1691
34 Y A 0.9423
35 F A 1.3230
36 E A 0.3272
37 F A 2.1880
38 L A 1.7905
39 G A 0.4325
40 S A -0.1896
41 G A -0.5455
42 E A -1.7234
43 A A -0.3204
44 I A 0.4688
45 V A 0.9800
46 L A 0.8746
47 T A 0.3178
48 V A 0.0000
49 P A -1.0670
50 G A 0.0000
51 S A -1.5933
52 E A -1.6518
53 R A -1.0877
54 S A -0.8834
55 Y A -1.0424
56 D A -2.1384
57 L A 0.0000
58 T A -1.5516
59 G A -1.5237
60 L A 0.0000
61 K A -2.3220
62 P A -1.6443
63 G A -0.1755
64 T A 1.2315
65 E A 0.0000
66 Y A 2.2952
67 W A 0.0000
68 Q A 0.4626
69 I A 0.0000
70 I A 0.0000
71 G A 0.0000
72 V A -0.2655
73 K A -1.5729
74 G A -1.5123
75 G A -1.2414
76 H A -0.7797
77 I A 1.4744
78 S A 0.0000
79 L A 2.0642
80 P A 0.7080
81 L A -0.1213
82 S A 0.4279
83 A A 1.5733
84 I A 2.8104
85 F A 1.7986
86 T A 0.5322
87 T A -1.5823
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Laboratory of Theory of Biopolymers 2018