| Chain sequence(s) |
H: QVQLQQPGAELVKPGASVKLSCKASGYTFTNYWMHWVKQRPGRGLEWIGRIDPDNGETNYNEKFKTKATLTVDKPSSTAYMQLSSLTSEDSAVYYCARRAYYSKNALDYWGQGTSVTVSS
L: DAVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYFCSQSTHVPYTFGGGTKLELK input PDB |
| Selected Chain(s) | H,L |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:23)
[INFO] Main: Simulation completed successfully. (00:01:24)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | Q | H | -1.5679 | |
| 2 | V | H | -1.2091 | |
| 3 | Q | H | -2.0580 | |
| 4 | L | H | 0.0000 | |
| 5 | Q | H | -2.1871 | |
| 6 | Q | H | 0.0000 | |
| 7 | P | H | -1.0125 | |
| 8 | G | H | -0.9522 | |
| 9 | A | H | -0.1770 | |
| 11 | E | H | -0.2356 | |
| 12 | L | H | 0.8692 | |
| 13 | V | H | -0.2178 | |
| 14 | K | H | -1.6536 | |
| 15 | P | H | -1.3744 | |
| 16 | G | H | -1.1218 | |
| 17 | A | H | -0.8696 | |
| 18 | S | H | -1.0264 | |
| 19 | V | H | 0.0000 | |
| 20 | K | H | -1.7725 | |
| 21 | L | H | 0.0000 | |
| 22 | S | H | -0.7855 | |
| 23 | C | H | 0.0000 | |
| 24 | K | H | -1.7545 | |
| 25 | A | H | 0.0000 | |
| 26 | S | H | -1.3439 | |
| 27 | G | H | -1.0959 | |
| 28 | Y | H | -0.6064 | |
| 29 | T | H | -0.5103 | |
| 30 | F | H | 0.0000 | |
| 35 | T | H | -1.6176 | |
| 36 | N | H | -1.1107 | |
| 37 | Y | H | -0.0640 | |
| 38 | W | H | -0.3667 | |
| 39 | M | H | 0.0000 | |
| 40 | H | H | 0.0000 | |
| 41 | W | H | 0.0000 | |
| 42 | V | H | 0.0000 | |
| 43 | K | H | 0.0000 | |
| 44 | Q | H | -0.9874 | |
| 45 | R | H | -1.5878 | |
| 46 | P | H | -1.2055 | |
| 47 | G | H | -1.6126 | |
| 48 | R | H | -2.5311 | |
| 49 | G | H | -1.4837 | |
| 50 | L | H | 0.0000 | |
| 51 | E | H | -1.2069 | |
| 52 | W | H | 0.0000 | |
| 53 | I | H | 0.0000 | |
| 54 | G | H | 0.0000 | |
| 55 | R | H | -0.6416 | |
| 56 | I | H | 0.0000 | |
| 57 | D | H | -1.8790 | |
| 58 | P | H | 0.0000 | |
| 59 | D | H | -3.1879 | |
| 62 | N | H | -2.7374 | |
| 63 | G | H | -2.1788 | |
| 64 | E | H | -2.5191 | |
| 65 | T | H | -1.2406 | |
| 66 | N | H | -0.9518 | |
| 67 | Y | H | -1.2385 | |
| 68 | N | H | -2.0052 | |
| 69 | E | H | -3.3341 | |
| 70 | K | H | -3.1823 | |
| 71 | F | H | 0.0000 | |
| 72 | K | H | -2.9529 | |
| 74 | T | H | -1.6369 | |
| 75 | K | H | -1.4196 | |
| 76 | A | H | 0.0000 | |
| 77 | T | H | -0.7245 | |
| 78 | L | H | 0.0000 | |
| 79 | T | H | -0.5204 | |
| 80 | V | H | -0.7549 | |
| 81 | D | H | -1.3261 | |
| 82 | K | H | -1.8237 | |
| 83 | P | H | -0.9723 | |
| 84 | S | H | -0.9066 | |
| 85 | S | H | -1.0013 | |
| 86 | T | H | 0.0000 | |
| 87 | A | H | 0.0000 | |
| 88 | Y | H | -0.3703 | |
| 89 | M | H | 0.0000 | |
| 90 | Q | H | -1.1926 | |
| 91 | L | H | 0.0000 | |
| 92 | S | H | -0.7688 | |
| 93 | S | H | -0.7930 | |
| 94 | L | H | 0.0000 | |
| 95 | T | H | -1.2609 | |
| 96 | S | H | -1.4552 | |
| 97 | E | H | -2.0109 | |
| 98 | D | H | 0.0000 | |
| 99 | S | H | -0.6667 | |
| 100 | A | H | 0.0000 | |
| 101 | V | H | 0.0079 | |
| 102 | Y | H | 0.0000 | |
| 103 | Y | H | 0.0000 | |
| 104 | C | H | 0.0000 | |
| 105 | A | H | 0.0000 | |
| 106 | R | H | 0.0000 | |
| 107 | R | H | 0.1767 | |
| 108 | A | H | 0.0000 | |
| 109 | Y | H | 1.4327 | |
| 110 | Y | H | 1.4351 | |
| 111 | S | H | 0.3350 | |
| 112 | K | H | -0.3932 | |
| 113 | N | H | -0.0342 | |
| 114 | A | H | 0.0000 | |
| 115 | L | H | 0.0000 | |
| 116 | D | H | -0.3316 | |
| 117 | Y | H | -0.2219 | |
| 118 | W | H | -0.6300 | |
| 119 | G | H | 0.0000 | |
| 120 | Q | H | -1.5647 | |
| 121 | G | H | 0.0000 | |
| 122 | T | H | 0.0000 | |
| 123 | S | H | -0.1868 | |
| 124 | V | H | 0.0000 | |
| 125 | T | H | -0.1481 | |
| 126 | V | H | 0.0000 | |
| 127 | S | H | -0.6309 | |
| 128 | S | H | -0.7493 | |
| 1 | D | L | -1.4920 | |
| 2 | A | L | 0.0000 | |
| 3 | V | L | 0.6820 | |
| 4 | M | L | 0.0000 | |
| 5 | T | L | -0.3307 | |
| 6 | Q | L | 0.0000 | |
| 7 | T | L | 0.0073 | |
| 8 | P | L | 0.4390 | |
| 9 | L | L | 1.1706 | |
| 10 | S | L | 0.1477 | |
| 11 | L | L | -0.1829 | |
| 12 | P | L | -0.8280 | |
| 13 | V | L | 0.0000 | |
| 14 | S | L | -0.6131 | |
| 15 | L | L | 0.0965 | |
| 16 | G | L | -1.1059 | |
| 17 | D | L | -1.4303 | |
| 18 | Q | L | -1.9872 | |
| 19 | A | L | 0.0000 | |
| 20 | S | L | -0.8028 | |
| 21 | I | L | 0.0000 | |
| 22 | S | L | -0.7561 | |
| 23 | C | L | 0.0000 | |
| 24 | R | L | -2.2271 | |
| 25 | S | L | 0.0000 | |
| 26 | S | L | -0.9814 | |
| 27 | Q | L | -1.5035 | |
| 28 | S | L | -0.8764 | |
| 29 | L | L | 0.0000 | |
| 30 | V | L | 0.1979 | |
| 31 | H | L | -0.6826 | |
| 32 | S | L | -0.9573 | |
| 34 | N | L | -1.6368 | |
| 35 | G | L | -1.0956 | |
| 36 | N | L | -0.8905 | |
| 37 | T | L | -0.3349 | |
| 38 | Y | L | 0.0000 | |
| 39 | L | L | 0.0000 | |
| 40 | H | L | 0.0000 | |
| 41 | W | L | 0.0000 | |
| 42 | Y | L | 0.0000 | |
| 43 | L | L | 0.0000 | |
| 44 | Q | L | -0.7469 | |
| 45 | K | L | -1.0710 | |
| 46 | P | L | -0.6927 | |
| 47 | G | L | -1.0601 | |
| 48 | Q | L | -1.3382 | |
| 49 | S | L | -0.9516 | |
| 50 | P | L | 0.0000 | |
| 51 | K | L | -1.1214 | |
| 52 | L | L | 0.0000 | |
| 53 | L | L | 0.0000 | |
| 54 | I | L | 0.0000 | |
| 55 | Y | L | 0.0000 | |
| 56 | K | L | -0.8819 | |
| 57 | V | L | 0.0000 | |
| 65 | S | L | -0.9697 | |
| 66 | N | L | -1.3612 | |
| 67 | R | L | -1.6370 | |
| 68 | F | L | -0.7839 | |
| 69 | S | L | -0.5733 | |
| 70 | G | L | -0.7909 | |
| 71 | V | L | -0.8300 | |
| 72 | P | L | -1.2015 | |
| 74 | D | L | -2.1564 | |
| 75 | R | L | -2.0685 | |
| 76 | F | L | 0.0000 | |
| 77 | S | L | -1.3436 | |
| 78 | G | L | 0.0000 | |
| 79 | S | L | -0.9040 | |
| 80 | G | L | -1.0335 | |
| 83 | S | L | -0.7137 | |
| 84 | G | L | -0.7197 | |
| 85 | T | L | -1.3969 | |
| 86 | D | L | -1.9161 | |
| 87 | F | L | 0.0000 | |
| 88 | T | L | -0.9678 | |
| 89 | L | L | 0.0000 | |
| 90 | K | L | -1.6607 | |
| 91 | I | L | 0.0000 | |
| 92 | S | L | -2.3498 | |
| 93 | R | L | -2.7220 | |
| 94 | V | L | 0.0000 | |
| 95 | E | L | -1.8932 | |
| 96 | A | L | -0.9883 | |
| 97 | E | L | -2.0452 | |
| 98 | D | L | 0.0000 | |
| 99 | L | L | -0.7031 | |
| 100 | G | L | 0.0000 | |
| 101 | V | L | -0.0796 | |
| 102 | Y | L | 0.0000 | |
| 103 | F | L | 0.0000 | |
| 104 | C | L | 0.0000 | |
| 105 | S | L | 0.0000 | |
| 106 | Q | L | 0.0000 | |
| 107 | S | L | 0.0000 | |
| 108 | T | L | 0.0000 | |
| 109 | H | L | 0.0306 | |
| 114 | V | L | 0.8382 | |
| 115 | P | L | -0.3000 | |
| 116 | Y | L | 0.0000 | |
| 117 | T | L | 0.1426 | |
| 118 | F | L | 0.1945 | |
| 119 | G | L | 0.0000 | |
| 120 | G | L | -0.4758 | |
| 121 | G | L | 0.0000 | |
| 122 | T | L | 0.0000 | |
| 123 | K | L | -0.6637 | |
| 124 | L | L | 0.0000 | |
| 125 | E | L | -0.8415 | |
| 126 | L | L | -0.3856 | |
| 127 | K | L | -1.3362 |