| Chain sequence(s) |
A: FEFEFKFK
C: FEFEFKFK B: FEFEFKFK D: FEFEFKFK input PDB |
| Selected Chain(s) | A,C,B,D |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:00)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:00)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:00)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:00)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:00)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:01:44)
[INFO] Main: Simulation completed successfully. (00:01:45)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | F | A | 2.1533 | |
| 2 | E | A | 0.8196 | |
| 3 | F | A | 2.7623 | |
| 4 | E | A | 1.3946 | |
| 5 | F | A | 2.8464 | |
| 6 | K | A | 2.4589 | |
| 7 | F | A | 2.7747 | |
| 8 | K | A | 0.8104 | |
| 1 | F | B | 1.3783 | |
| 2 | E | B | -0.2784 | |
| 3 | F | B | 2.2457 | |
| 4 | E | B | 1.1183 | |
| 5 | F | B | 3.1708 | |
| 6 | K | B | 2.7267 | |
| 7 | F | B | 4.1619 | |
| 8 | K | B | 3.4578 | |
| 1 | F | C | 3.6761 | |
| 2 | E | C | 0.0000 | |
| 3 | F | C | 3.5326 | |
| 4 | E | C | 2.0680 | |
| 5 | F | C | 2.4765 | |
| 6 | K | C | 0.7694 | |
| 7 | F | C | 1.9035 | |
| 8 | K | C | -0.6424 | |
| 1 | F | D | 3.3734 | |
| 2 | E | D | 3.7972 | |
| 3 | F | D | 4.1417 | |
| 4 | E | D | 3.0609 | |
| 5 | F | D | 2.7678 | |
| 6 | K | D | 0.7098 | |
| 7 | F | D | 1.5901 | |
| 8 | K | D | -0.6435 |