| Chain sequence(s) |
A: GNNQQNY
C: GNNQQNY B: GNNQQNY E: GNNQQNY D: GNNQQNY G: GNNQQNY F: GNNQQNY H: GNNQQNY input PDB |
| Selected Chain(s) | A,C,B,E,D,G,F,H |
| Distance of aggregation | 10 Å |
| FoldX usage | Yes |
| Dynamic mode | No |
| Automated mutations | No |
| Downloads | Download all the data |
| Simulation log |
[INFO] Logger: Verbosity set to: 2 - [INFO] (00:00:01)
[WARNING] runJob: Working directory already exists (possibly overwriting previous results -ow
to prevent this behavior) (00:00:01)
[INFO] runJob: Starting aggrescan3d job on: input.pdb with all chain(s) selected (00:00:01)
[INFO] runJob: Creating pdb object from: input.pdb (00:00:01)
[INFO] FoldX: Starting FoldX energy minimalization (00:00:01)
[INFO] Analysis: Starting Aggrescan3D on folded.pdb (00:00:34)
[INFO] Main: Simulation completed successfully. (00:00:36)
|
The table below lists A3D score for protein residues. Residues with A3D score > 0.0000 are marked by yellow rows.
| residue index | residue name | chain | Aggrescan3D score | mutation |
|---|---|---|---|---|
| residue index | residue name | chain | Aggrescan3D score | |
| 1 | G | A | -2.1843 | |
| 2 | N | A | -2.6814 | |
| 3 | N | A | -2.8421 | |
| 4 | Q | A | -2.9336 | |
| 5 | Q | A | -2.3910 | |
| 6 | N | A | -2.4286 | |
| 7 | Y | A | 0.0032 | |
| 1 | G | B | -2.8801 | |
| 2 | N | B | -2.6406 | |
| 3 | N | B | -2.8455 | |
| 4 | Q | B | -2.9135 | |
| 5 | Q | B | -2.1755 | |
| 6 | N | B | -1.8382 | |
| 7 | Y | B | 0.3567 | |
| 1 | G | C | 0.0000 | |
| 2 | N | C | 0.0000 | |
| 3 | N | C | -3.0431 | |
| 4 | Q | C | 0.0000 | |
| 5 | Q | C | -2.8117 | |
| 6 | N | C | -2.7614 | |
| 7 | Y | C | -0.6053 | |
| 1 | G | D | -2.5719 | |
| 2 | N | D | -3.4756 | |
| 3 | N | D | 0.0000 | |
| 4 | Q | D | -3.0285 | |
| 5 | Q | D | -2.4529 | |
| 6 | N | D | -1.2990 | |
| 7 | Y | D | 0.4501 | |
| 1 | G | E | -3.2687 | |
| 2 | N | E | -3.7124 | |
| 3 | N | E | -3.1349 | |
| 4 | Q | E | -2.6919 | |
| 5 | Q | E | -1.7528 | |
| 6 | N | E | -0.5363 | |
| 7 | Y | E | 0.8148 | |
| 1 | G | F | -2.8338 | |
| 2 | N | F | -3.5432 | |
| 3 | N | F | -3.5613 | |
| 4 | Q | F | -3.1481 | |
| 5 | Q | F | -2.5814 | |
| 6 | N | F | -1.7708 | |
| 7 | Y | F | 0.3250 | |
| 1 | G | G | -3.0980 | |
| 2 | N | G | -3.5007 | |
| 3 | N | G | -3.4294 | |
| 4 | Q | G | -3.3290 | |
| 5 | Q | G | -3.0203 | |
| 6 | N | G | -1.9267 | |
| 7 | Y | G | -0.0324 | |
| 1 | G | H | -2.0386 | |
| 2 | N | H | -2.8903 | |
| 3 | N | H | -3.3586 | |
| 4 | Q | H | -3.1622 | |
| 5 | Q | H | -2.5002 | |
| 6 | N | H | -2.4865 | |
| 7 | Y | H | -0.1665 |